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Page 1
Empirically establishing drug exposure records directly from untargeted metabolomics data.
Zhao HN, Kvitne KE, Brungs C, Mohan S, Charron-Lamoureux V, Bittremieux W, Tang R, Schmid R, Lamichhane S, El Abiead Y, Andalibi MS, Mannochio-Russo H, Ambre M, Avalon NE, Bryant M, Caraballo-Rodríguez AM, Maya MC, Chin L, Ellis RJ, Franklin D, Girod S, Gomes PWP, Hansen L, Heaton R, Iudicello JE, Jarmusch AK, Khatib L, Letendre S, Magyari S, McDonald D, Mohanty I, Cumsille A, Moore DJ, Rajkumar P, Ross DH, Sapre H, Shahneh MRZ, Thomas SP, Tribelhorn C, Tubb HM, Walker C, Wang CX, Xing S, Zemlin J, Zuffa S, Wishart DS, Kaddurah-Daouk R, Wang M, Raffatellu M, Zengler K, Pluskal T, Xu L, Knight R, Tsunoda SM, Dorrestein PC. Zhao HN, et al. Among authors: bryant m. bioRxiv [Preprint]. 2024 Oct 26:2024.10.07.617109. doi: 10.1101/2024.10.07.617109. bioRxiv. 2024. PMID: 39416075 Free PMC article. Preprint.
Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.
Taylor BC, Weldon KC, Ellis RJ, Franklin D, Groth T, Gentry EC, Tripathi A, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Oliveira MF, Heaton R, Grant I, Gianella S, Letendre S, Swafford A, Dorrestein PC, Knight R. Taylor BC, et al. Among authors: bryant m. mSystems. 2020 Sep 29;5(5):e00465-20. doi: 10.1128/mSystems.00465-20. mSystems. 2020. PMID: 32994287 Free PMC article.
Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV.
Taylor BC, Weldon KC, Ellis RJ, Franklin D, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Iudicello J, Heaton R, Grant I, Gianella S, Letendre S, Swafford A, Dorrestein PC, Knight R. Taylor BC, et al. Among authors: bryant m. mSystems. 2020 Oct 13;5(5):e00528-20. doi: 10.1128/mSystems.00528-20. mSystems. 2020. PMID: 33051377 Free PMC article.
Enhancing untargeted metabolomics using metadata-based source annotation.
Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP Jr, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC. Gauglitz JM, et al. Among authors: bryant m. Nat Biotechnol. 2022 Dec;40(12):1774-1779. doi: 10.1038/s41587-022-01368-1. Epub 2022 Jul 7. Nat Biotechnol. 2022. PMID: 35798960 Free PMC article.
Pangenome comparison of Bacteroides fragilis genomospecies unveil genetic diversity and ecological insights.
Oles RE, Terrazas MC, Loomis LR, Hsu CY, Tribelhorn C, Ferre PB, Ea A, Bryant M, Young J, Carrow HC, Sandborn WJ, Dulai P, Sivagnanam M, Pride D, Knight R, Chu H. Oles RE, et al. Among authors: bryant m. bioRxiv [Preprint]. 2023 Dec 21:2023.12.20.572674. doi: 10.1101/2023.12.20.572674. bioRxiv. 2023. Update in: mSystems. 2024 Jul 23;9(7):e0051624. doi: 10.1128/msystems.00516-24 PMID: 38187556 Free PMC article. Updated. Preprint.
Pathogenic Bacteroides fragilis strains can emerge from gut-resident commensals.
Oles RE, Terrazas MC, Loomis LR, Neal MJ, Paulchakrabarti M, Zuffa S, Hsu CY, Vasquez Ayala A, Lee MH, Tribelhorn C, Belda-Ferre P, Bryant M, Zemlin J, Young J, Dulai P, Sandborn WJ, Sivagnanam M, Raffatellu M, Pride D, Dorrestein PC, Zengler K, Choudhury B, Knight R, Chu H. Oles RE, et al. Among authors: bryant m. bioRxiv [Preprint]. 2024 Jun 19:2024.06.19.599758. doi: 10.1101/2024.06.19.599758. bioRxiv. 2024. PMID: 38948766 Free PMC article. Preprint.
Impact of diet change on the gut microbiome of common marmosets (Callithrix jacchus).
Tang-Wing C, Mohanty I, Bryant M, Makowski K, Melendez D, Dorrestein PC, Knight R, Caraballo-Rodríguez AM, Allaband C, Jenné K. Tang-Wing C, et al. Among authors: bryant m. mSystems. 2024 Aug 20;9(8):e0010824. doi: 10.1128/msystems.00108-24. Epub 2024 Jul 8. mSystems. 2024. PMID: 38975760 Free PMC article.
Gut Microbiome Compositional and Functional Features Associate with Alzheimer's Disease Pathology.
Kang JW, Khatib LA, Heston MB, Dilmore AH, Labus JS, Deming Y, Schimmel L, Blach C, McDonald D, Gonzalez A, Bryant M, Sanders K, Schwartz A, Ulland TK, Johnson SC, Asthana S, Carlsson CM, Chin NA, Blennow K, Zetterberg H, Rey FE; Alzheimer Gut Microbiome Project Consortium; Kaddurah-Daouk R, Knight R, Bendlin BB. Kang JW, et al. Among authors: bryant m. medRxiv [Preprint]. 2024 Sep 5:2024.09.04.24313004. doi: 10.1101/2024.09.04.24313004. medRxiv. 2024. PMID: 39281749 Free PMC article. Preprint.
Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies.
Brennan C, Belda-Ferre P, Zuffa S, Charron-Lamoureux V, Mohanty I, Ackermann G, Allaband C, Ambre M, Boyer T, Bryant M, Cantrell K, Gonzalez A, McDonald D, Salido RA, Song SJ, Wright G, Dorrestein PC, Knight R. Brennan C, et al. Among authors: bryant m. mSystems. 2024 Oct 22;9(10):e0098524. doi: 10.1128/msystems.00985-24. Epub 2024 Sep 16. mSystems. 2024. PMID: 39283083 Free PMC article.
1,084 results