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Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships.
Kudron M, Gewirtzman L, Victorsen A, Lear BC, Vafeados D, Gao J, Xu J, Samanta S, Frink E, Tran-Pearson A, Hyunh C, Hammonds A, Fisher W, Wall ML, Wesseling G, Hernandez V, Lin Z, Kasparian M, White KP, Allada R, Gerstein M, Hillier L, Celniker SE, Reinke V, Waterston R. Kudron M, et al. Among authors: reinke v. Genome Res. 2024 Oct 22:gr.279037.124. doi: 10.1101/gr.279037.124. Online ahead of print. Genome Res. 2024. PMID: 39438113
Binding profiles for 954 Drosophila and C. elegans transcription factors reveal tissue specific regulatory relationships.
Kudron M, Gevirtzman L, Victorsen A, Lear BC, Gao J, Xu J, Samanta S, Frink E, Tran-Pearson A, Huynh C, Vafeados D, Hammonds A, Fisher W, Wall M, Wesseling G, Hernandez V, Lin Z, Kasparian M, White K, Allada R, Gerstein M, Hillier L, Celniker SE, Reinke V, Waterston RH. Kudron M, et al. Among authors: reinke v. bioRxiv [Preprint]. 2024 Jan 20:2024.01.18.576242. doi: 10.1101/2024.01.18.576242. bioRxiv. 2024. Update in: Genome Res. 2024 Oct 22:gr.279037.124. doi: 10.1101/gr.279037.124. PMID: 38293065 Free PMC article. Updated. Preprint.
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.
Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, Gerstein M, Snyder M, Reinke V. Niu W, et al. Among authors: reinke v. Genome Res. 2011 Feb;21(2):245-54. doi: 10.1101/gr.114587.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177963 Free PMC article.
Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.
Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB. Lu ZJ, et al. Among authors: reinke v. Genome Res. 2011 Feb;21(2):276-85. doi: 10.1101/gr.110189.110. Epub 2010 Dec 22. Genome Res. 2011. PMID: 21177971 Free PMC article.
The time-resolved transcriptome of C. elegans.
Boeck ME, Huynh C, Gevirtzman L, Thompson OA, Wang G, Kasper DM, Reinke V, Hillier LW, Waterston RH. Boeck ME, et al. Among authors: reinke v. Genome Res. 2016 Oct;26(10):1441-1450. doi: 10.1101/gr.202663.115. Epub 2016 Aug 16. Genome Res. 2016. PMID: 27531719 Free PMC article.
The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.
Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. Kudron MM, et al. Among authors: reinke v. Genetics. 2018 Mar;208(3):937-949. doi: 10.1534/genetics.117.300657. Epub 2017 Dec 28. Genetics. 2018. PMID: 29284660 Free PMC article.
Developmental genomic approaches in model organisms.
Reinke V, White KP. Reinke V, et al. Annu Rev Genomics Hum Genet. 2002;3:153-78. doi: 10.1146/annurev.genom.3.031302.100922. Epub 2002 Apr 15. Annu Rev Genomics Hum Genet. 2002. PMID: 12142361 Review.
87 results