Ritchey LE - Search Results

1

NusG-dependent RNA polymerase pausing is a common feature of riboswitch regulatory mechanisms.

Jayasinghe OT, Ritchey LE, Breil T, Newman P, Yakhnin H, Babitzke P. Jayasinghe OT, et al. Among authors: ritchey le. Nucleic Acids Res. 2024 Nov 27;52(21):12945-12960. doi: 10.1093/nar/gkae981. Nucleic Acids Res. 2024. PMID: 39494516 Free PMC article.

2

Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis.

Ritchey LE, Tack DC, Yakhnin H, Jolley EA, Assmann SM, Bevilacqua PC, Babitzke P. Ritchey LE, et al. RNA. 2020 Oct;26(10):1431-1447. doi: 10.1261/rna.075986.120. Epub 2020 Jul 1. RNA. 2020. PMID: 32611709 Free PMC article.

3

Glyoxals as in vivo RNA structural probes of guanine base-pairing.

Mitchell D 3rd, Ritchey LE, Park H, Babitzke P, Assmann SM, Bevilacqua PC. Mitchell D 3rd, et al. Among authors: ritchey le. RNA. 2018 Jan;24(1):114-124. doi: 10.1261/rna.064014.117. Epub 2017 Oct 13. RNA. 2018. PMID: 29030489 Free PMC article.

4

Eliminating blurry bands in gels with a simple cost-effective repair to the gel cassette.

Bingaman JL, Frankel EA, Hull CM, Leamy KA, Messina KJ, Mitchell D 3rd, Park H, Ritchey LE, Babitzke P, Bevilacqua PC. Bingaman JL, et al. Among authors: ritchey le. RNA. 2016 Dec;22(12):1929-1930. doi: 10.1261/rna.059303.116. Epub 2016 Oct 19. RNA. 2016. PMID: 27852929 Free PMC article.

5

Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo.

Ritchey LE, Su Z, Tang Y, Tack DC, Assmann SM, Bevilacqua PC. Ritchey LE, et al. Nucleic Acids Res. 2017 Aug 21;45(14):e135. doi: 10.1093/nar/gkx533. Nucleic Acids Res. 2017. PMID: 28637286 Free PMC article.

6

Genome-Wide Analysis of RNA Secondary Structure.

Bevilacqua PC, Ritchey LE, Su Z, Assmann SM. Bevilacqua PC, et al. Among authors: ritchey le. Annu Rev Genet. 2016 Nov 23;50:235-266. doi: 10.1146/annurev-genet-120215-035034. Epub 2016 Sep 14. Annu Rev Genet. 2016. PMID: 27648642 Review.

7

In Vivo Genome-Wide RNA Structure Probing with Structure-seq.

Ritchey LE, Su Z, Assmann SM, Bevilacqua PC. Ritchey LE, et al. Methods Mol Biol. 2019;1933:305-341. doi: 10.1007/978-1-4939-9045-0_20. Methods Mol Biol. 2019. PMID: 30945195

8

mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity.

Waldron JA, Tack DC, Ritchey LE, Gillen SL, Wilczynska A, Turro E, Bevilacqua PC, Assmann SM, Bushell M, Le Quesne J. Waldron JA, et al. Among authors: ritchey le. Genome Biol. 2019 Dec 30;20(1):300. doi: 10.1186/s13059-019-1901-2. Genome Biol. 2019. PMID: 31888698 Free PMC article.

9

Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance.

Su Z, Tang Y, Ritchey LE, Tack DC, Zhu M, Bevilacqua PC, Assmann SM. Su Z, et al. Among authors: ritchey le. Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12170-12175. doi: 10.1073/pnas.1807988115. Epub 2018 Nov 9. Proc Natl Acad Sci U S A. 2018. PMID: 30413617 Free PMC article.

10

StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.

Tack DC, Tang Y, Ritchey LE, Assmann SM, Bevilacqua PC. Tack DC, et al. Among authors: ritchey le. Methods. 2018 Jul 1;143:12-15. doi: 10.1016/j.ymeth.2018.01.018. Epub 2018 Feb 2. Methods. 2018. PMID: 29410279

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