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Accurate de novo design of high-affinity protein binding macrocycles using deep learning.
Rettie SA, Juergens D, Adebomi V, Bueso YF, Zhao Q, Leveille AN, Liu A, Bera AK, Wilms JA, Üffing A, Kang A, Brackenbrough E, Lamb M, Gerben SR, Murray A, Levine PM, Schneider M, Vasireddy V, Ovchinnikov S, Weiergräber OH, Willbold D, Kritzer JA, Mougous JD, Baker D, DiMaio F, Bhardwaj G. Rettie SA, et al. Among authors: bera ak. bioRxiv [Preprint]. 2024 Nov 18:2024.11.18.622547. doi: 10.1101/2024.11.18.622547. bioRxiv. 2024. PMID: 39605685 Free PMC article. Preprint.
Design of facilitated dissociation enables control over cytokine signaling duration.
Broerman AJ, Pollmann C, Lichtenstein MA, Jackson MD, Tessmer MH, Ryu WH, Abedi MH, Sahtoe DD, Allen A, Kang A, De La Cruz J, Brackenbrough E, Sankaran B, Bera AK, Zuckerman DM, Stoll S, Praetorius F, Piehler J, Baker D. Broerman AJ, et al. Among authors: bera ak. bioRxiv [Preprint]. 2024 Nov 16:2024.11.15.623900. doi: 10.1101/2024.11.15.623900. bioRxiv. 2024. PMID: 39605600 Free PMC article. Preprint.
Designed miniproteins potently inhibit and protect against MERS-CoV.
Ragotte RJ, Tortorici MA, Catanzaro NJ, Addetia A, Coventry B, Froggatt HM, Lee J, Stewart C, Brown JT, Goreshnik I, Sims JN, Milles LF, Wicky BIM, Glögl M, Gerben S, Kang A, Bera AK, Sharkey W, Schäfer A, Baric RS, Baker D, Veesler D. Ragotte RJ, et al. Among authors: bera ak. bioRxiv [Preprint]. 2024 Nov 4:2024.11.03.621760. doi: 10.1101/2024.11.03.621760. bioRxiv. 2024. PMID: 39574666 Free PMC article. Preprint.
563 results