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Offline ensemble co-reactivation links memories across days.
Zaki Y, Pennington ZT, Morales-Rodriguez D, Bacon ME, Ko B, Francisco TR, LaBanca AR, Sompolpong P, Dong Z, Lamsifer S, Chen HT, Carrillo Segura S, Christenson Wick Z, Silva AJ, Rajan K, van der Meer M, Fenton A, Shuman T, Cai DJ. Zaki Y, et al. Among authors: shuman t. Nature. 2025 Jan;637(8044):145-155. doi: 10.1038/s41586-024-08168-4. Epub 2024 Nov 6. Nature. 2025. PMID: 39506117 Free PMC article.
Aversive experience drives offline ensemble reactivation to link memories across days.
Zaki Y, Pennington ZT, Morales-Rodriguez D, Francisco TR, LaBanca AR, Dong Z, Lamsifer S, Segura SC, Chen HT, Wick ZC, Silva AJ, van der Meer M, Shuman T, Fenton A, Rajan K, Cai DJ. Zaki Y, et al. Among authors: shuman t. bioRxiv [Preprint]. 2023 Aug 19:2023.03.13.532469. doi: 10.1101/2023.03.13.532469. bioRxiv. 2023. Update in: Nature. 2024 Nov 6. doi: 10.1038/s41586-024-08168-4 PMID: 36993254 Free PMC article. Updated. Preprint.
A shared neural ensemble links distinct contextual memories encoded close in time.
Cai DJ, Aharoni D, Shuman T, Shobe J, Biane J, Song W, Wei B, Veshkini M, La-Vu M, Lou J, Flores SE, Kim I, Sano Y, Zhou M, Baumgaertel K, Lavi A, Kamata M, Tuszynski M, Mayford M, Golshani P, Silva AJ. Cai DJ, et al. Among authors: shuman t. Nature. 2016 Jun 2;534(7605):115-8. doi: 10.1038/nature17955. Epub 2016 May 23. Nature. 2016. PMID: 27251287 Free PMC article.
Ensemble-specific deficit in neuronal intrinsic excitability in aged mice.
Chen L, Francisco TR, Baggetta AM, Zaki Y, Ramirez S, Clem RL, Shuman T, Cai DJ. Chen L, et al. Among authors: shuman t. Neurobiol Aging. 2023 Mar;123:92-97. doi: 10.1016/j.neurobiolaging.2022.12.007. Epub 2022 Dec 22. Neurobiol Aging. 2023. PMID: 36652783 Free PMC article.
Dissociable contributions of the amygdala and ventral hippocampus to stress-induced changes in defensive behavior.
Pennington ZT, LaBanca AR, Sompolpong P, Abdel-Raheim SD, Ko B, Christenson Wick Z, Feng Y, Dong Z, Francisco TR, Bacon ME, Chen L, Fulton SL, Maze I, Shuman T, Cai DJ. Pennington ZT, et al. Among authors: shuman t. Cell Rep. 2024 Nov 26;43(11):114871. doi: 10.1016/j.celrep.2024.114871. Epub 2024 Oct 19. Cell Rep. 2024. PMID: 39427320 Free article.
Breakdown of spatial coding and interneuron synchronization in epileptic mice.
Shuman T, Aharoni D, Cai DJ, Lee CR, Chavlis S, Page-Harley L, Vetere LM, Feng Y, Yang CY, Mollinedo-Gajate I, Chen L, Pennington ZT, Taxidis J, Flores SE, Cheng K, Javaherian M, Kaba CC, Rao N, La-Vu M, Pandi I, Shtrahman M, Bakhurin KI, Masmanidis SC, Khakh BS, Poirazi P, Silva AJ, Golshani P. Shuman T, et al. Nat Neurosci. 2020 Feb;23(2):229-238. doi: 10.1038/s41593-019-0559-0. Epub 2020 Jan 6. Nat Neurosci. 2020. PMID: 31907437 Free PMC article.
ezTrack-A Step-by-Step Guide to Behavior Tracking.
Pennington ZT, Diego KS, Francisco TR, LaBanca AR, Lamsifer SI, Liobimova O, Shuman T, Cai DJ. Pennington ZT, et al. Among authors: shuman t. Curr Protoc. 2021 Oct;1(10):e255. doi: 10.1002/cpz1.255. Curr Protoc. 2021. PMID: 34610215 Free PMC article.
Minian, an open-source miniscope analysis pipeline.
Dong Z, Mau W, Feng Y, Pennington ZT, Chen L, Zaki Y, Rajan K, Shuman T, Aharoni D, Cai DJ. Dong Z, et al. Among authors: shuman t. Elife. 2022 Jun 1;11:e70661. doi: 10.7554/eLife.70661. Elife. 2022. PMID: 35642786 Free PMC article.
66 results