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The NHGRI-EBI GWAS Catalog: standards for reusability, sustainability and diversity.
Cerezo M, Sollis E, Ji Y, Lewis E, Abid A, Bircan KO, Hall P, Hayhurst J, John S, Mosaku A, Ramachandran S, Foreman A, Ibrahim A, McLaughlin J, Pendlington Z, Stefancsik R, Lambert SA, McMahon A, Morales J, Keane T, Inouye M, Parkinson H, Harris LW. Cerezo M, et al. Among authors: mclaughlin j. Nucleic Acids Res. 2025 Jan 6;53(D1):D998-D1005. doi: 10.1093/nar/gkae1070. Nucleic Acids Res. 2025. PMID: 39530240 Free PMC article.
The NHGRI-EBI GWAS Catalog: standards for reusability, sustainability and diversity.
Cerezo M, Sollis E, Ji Y, Lewis E, Abid A, Bircan KO, Hall P, Hayhurst J, John S, Mosaku A, Ramachandran S, Foreman A, Ibrahim A, McLaughlin J, Pendlington Z, Stefancsik R, Lambert SA, McMahon A, Morales J, Keane T, Inouye M, Parkinson H, Harris LW. Cerezo M, et al. Among authors: mclaughlin j. bioRxiv [Preprint]. 2024 Oct 23:2024.10.23.619767. doi: 10.1101/2024.10.23.619767. bioRxiv. 2024. Update in: Nucleic Acids Res. 2025 Jan 6;53(D1):D998-D1005. doi: 10.1093/nar/gkae1070 PMID: 39484403 Free PMC article. Updated. Preprint.
The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics.
Matentzoglu N, Bello SM, Stefancsik R, Alghamdi SM, Anagnostopoulos AV, Balhoff JP, Balk MA, Bradford YM, Bridges Y, Callahan TJ, Caufield H, Cuzick A, Carmody LC, Caron AR, de Souza V, Engel SR, Fey P, Fisher M, Gehrke S, Grove C, Hansen P, Harris NL, Harris MA, Harris L, Ibrahim A, Jacobsen JOB, Köhler S, McMurry JA, Munoz-Fuentes V, Munoz-Torres MC, Parkinson H, Pendlington ZM, Pilgrim C, Robb SM, Robinson PN, Seager J, Segerdell E, Smedley D, Sollis E, Toro S, Vasilevsky N, Wood V, Haendel MA, Mungall CJ, McLaughlin JA, Osumi-Sutherland D. Matentzoglu N, et al. Among authors: mclaughlin ja. bioRxiv [Preprint]. 2024 Sep 22:2024.09.18.613276. doi: 10.1101/2024.09.18.613276. bioRxiv. 2024. PMID: 39345458 Free PMC article. Preprint.
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.
Putman TE, Schaper K, Matentzoglu N, Rubinetti VP, Alquaddoomi FS, Cox C, Caufield JH, Elsarboukh G, Gehrke S, Hegde H, Reese JT, Braun I, Bruskiewich RM, Cappelletti L, Carbon S, Caron AR, Chan LE, Chute CG, Cortes KG, De Souza V, Fontana T, Harris NL, Hartley EL, Hurwitz E, Jacobsen JOB, Krishnamurthy M, Laraway BJ, McLaughlin JA, McMurry JA, Moxon SAT, Mullen KR, O'Neil ST, Shefchek KA, Stefancsik R, Toro S, Vasilevsky NA, Walls RL, Whetzel PL, Osumi-Sutherland D, Smedley D, Robinson PN, Mungall CJ, Haendel MA, Munoz-Torres MC. Putman TE, et al. Among authors: mclaughlin ja. Nucleic Acids Res. 2024 Jan 5;52(D1):D938-D949. doi: 10.1093/nar/gkad1082. Nucleic Acids Res. 2024. PMID: 38000386 Free PMC article.
SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.
Martínez-García E, Goñi-Moreno A, Bartley B, McLaughlin J, Sánchez-Sampedro L, Del Pozo HP, Hernández CP, Marletta AS, De Lucrezia D, Sánchez-Fernández G, Fraile S, de Lorenzo V. Martínez-García E, et al. Among authors: mclaughlin j. Nucleic Acids Res. 2020 Apr 6;48(6):3395. doi: 10.1093/nar/gkaa114. Nucleic Acids Res. 2020. PMID: 32055834 Free PMC article. No abstract available.
SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.
Martínez-García E, Goñi-Moreno A, Bartley B, McLaughlin J, Sánchez-Sampedro L, Pascual Del Pozo H, Prieto Hernández C, Marletta AS, De Lucrezia D, Sánchez-Fernández G, Fraile S, de Lorenzo V. Martínez-García E, et al. Among authors: mclaughlin j. Nucleic Acids Res. 2020 Jan 8;48(D1):D1164-D1170. doi: 10.1093/nar/gkz1024. Nucleic Acids Res. 2020. PMID: 31740968 Free PMC article.
Towards a standard benchmark for variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework.
Bridges Y, de Souza V, Cortes KG, Haendel M, Harris NL, Korn DR, Marinakis NM, Matentzoglu N, McLaughlin JA, Mungall CJ, Osumi-Sutherland D, Robinson PN, Smedley D, Jacobsen JO. Bridges Y, et al. Among authors: mclaughlin ja. bioRxiv [Preprint]. 2024 Jun 16:2024.06.13.598672. doi: 10.1101/2024.06.13.598672. bioRxiv. 2024. PMID: 38915571 Free PMC article. Preprint.
Optimising fatigue, abdominal pain and faecal incontinence in people with inflammatory bowel disease (IBD-BOOST Optimise): feasibility study of a checklist and algorithm for initial nurse-led management.
Stagg I, Hart A, Cléirigh Büttner F, Fikree A, McLaughlin J, LeBlanc JF, Bouri S, Hamborg T, Miller L, Norton C. Stagg I, et al. Among authors: mclaughlin j. BMJ Open Gastroenterol. 2024 Dec 20;11(1):e001585. doi: 10.1136/bmjgast-2024-001585. BMJ Open Gastroenterol. 2024. PMID: 39797663 Free PMC article.
A general strategy for generating expert-guided, simplified views of ontologies.
Caron AR, Puig-Barbe A, Quardokus EM, Balhoff JP, Belfiore J, Chipampe NJ, Hardi J, Herr BW 2nd, Kir H, Roncaglia P, Musen MA, McLaughlin JA, Börner K, Osumi-Sutherland D. Caron AR, et al. Among authors: mclaughlin ja. bioRxiv [Preprint]. 2024 Dec 17:2024.12.13.628309. doi: 10.1101/2024.12.13.628309. bioRxiv. 2024. PMID: 39763856 Free PMC article. Preprint.
2,844 results