Liu R - Search Results

1

Improved prediction of post-translational modification crosstalk within proteins using DeepPCT.

Huang YX, Liu R. Huang YX, et al. Among authors: liu r. Bioinformatics. 2024 Nov 28;40(12):btae675. doi: 10.1093/bioinformatics/btae675. Bioinformatics. 2024. PMID: 39570595 Free PMC article.

2

PNBACE: an ensemble algorithm to predict the effects of mutations on protein-nucleic acid binding affinity.

Xiao SR, Zhang YK, Liu KY, Huang YX, Liu R. Xiao SR, et al. Among authors: liu r, liu ky. BMC Biol. 2024 Sep 11;22(1):203. doi: 10.1186/s12915-024-02006-9. BMC Biol. 2024. PMID: 39256728 Free PMC article.

3

Structure-based prediction of post-translational modification cross-talk within proteins using complementary residue- and residue pair-based features.

Liu HF, Liu R. Liu HF, et al. Among authors: liu r. Brief Bioinform. 2020 Mar 23;21(2):609-620. doi: 10.1093/bib/bby123. Brief Bioinform. 2020. PMID: 30649184

4

Dissecting and predicting different types of binding sites in nucleic acids based on structural information.

Jiang Z, Xiao SR, Liu R. Jiang Z, et al. Among authors: liu r. Brief Bioinform. 2022 Jan 17;23(1):bbab411. doi: 10.1093/bib/bbab411. Brief Bioinform. 2022. PMID: 34624074 Free PMC article.

5

RBRDetector: improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies.

Yang XX, Deng ZL, Liu R. Yang XX, et al. Among authors: liu r. Proteins. 2014 Oct;82(10):2455-71. doi: 10.1002/prot.24610. Epub 2014 Jun 9. Proteins. 2014. PMID: 24854765

6

Systematic comparison and prediction of the effects of missense mutations on protein-DNA and protein-RNA interactions.

Jiang Y, Liu HF, Liu R. Jiang Y, et al. Among authors: liu r, liu hf. PLoS Comput Biol. 2021 Apr 19;17(4):e1008951. doi: 10.1371/journal.pcbi.1008951. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33872313 Free PMC article.

7

Structure-based prediction of nucleic acid binding residues by merging deep learning- and template-based approaches.

Jiang Z, Shen YY, Liu R. Jiang Z, et al. Among authors: liu r. PLoS Comput Biol. 2023 Sep 6;19(9):e1011428. doi: 10.1371/journal.pcbi.1011428. eCollection 2023 Sep. PLoS Comput Biol. 2023. PMID: 37672551 Free PMC article.

8

SNBRFinder: A Sequence-Based Hybrid Algorithm for Enhanced Prediction of Nucleic Acid-Binding Residues.

Yang X, Wang J, Sun J, Liu R. Yang X, et al. Among authors: liu r. PLoS One. 2015 Jul 15;10(7):e0133260. doi: 10.1371/journal.pone.0133260. eCollection 2015. PLoS One. 2015. PMID: 26176857 Free PMC article.

9

Using support vector machine combined with post-processing procedure to improve prediction of interface residues in transient complexes.

Liu R, Zhou Y. Liu R, et al. Protein J. 2009 Oct;28(7-8):369-74. doi: 10.1007/s10930-009-9203-2. Protein J. 2009. PMID: 19760494

10

Integrating co-evolutionary signals and other properties of residue pairs to distinguish biological interfaces from crystal contacts.

Hu J, Liu HF, Sun J, Wang J, Liu R. Hu J, et al. Among authors: liu r, liu hf. Protein Sci. 2018 Sep;27(9):1723-1735. doi: 10.1002/pro.3448. Epub 2018 Aug 10. Protein Sci. 2018. PMID: 29931702 Free PMC article.

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