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Nascent transcript O-MAP reveals the molecular architecture of a single-locus subnuclear compartment built by RBM20 and the TTN RNA.
Kania EE, Fenix A, Marciniak DM, Lin Q, Bianchi S, Hristov B, Li S, Camplisson CK, Fields R, Beliveau BJ, Schweppe DK, Noble WS, Ong SE, Bertero A, Murry CE, Shechner DM. Kania EE, et al. Among authors: schweppe dk. bioRxiv [Preprint]. 2024 Nov 13:2024.11.05.622011. doi: 10.1101/2024.11.05.622011. bioRxiv. 2024. PMID: 39574693 Free PMC article. Preprint.
High-throughput identification of calcium-regulated proteins across diverse proteomes.
Locke TM, Fields R, Gizinski H, Otto GM, MacEwen MJS, Rusnac DV, He P, Shechner DM, McGann CD, Berg MD, Villen J, Sancak Y, Schweppe DK. Locke TM, et al. Among authors: schweppe dk. Cell Rep. 2024 Nov 26;43(11):114879. doi: 10.1016/j.celrep.2024.114879. Epub 2024 Oct 18. Cell Rep. 2024. PMID: 39425928 Free article.
The proteomic landscape and temporal dynamics of mammalian gastruloid development.
Garge RK, Lynch V, Fields R, Casadei S, Best S, Stone J, Snyder M, McGann CD, Shendure J, Starita LM, Hamazaki N, Schweppe DK. Garge RK, et al. Among authors: schweppe dk. bioRxiv [Preprint]. 2024 Sep 7:2024.09.05.609098. doi: 10.1101/2024.09.05.609098. bioRxiv. 2024. PMID: 39282277 Free PMC article. Preprint.
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci.
Liu Y, McGann CD, Krebs M, Perkins TA Jr, Fields R, Camplisson CK, Nwizugbo DZ, Hsu C, Avanessian SC, Tsue AF, Kania EE, Shechner DM, Beliveau BJ, Schweppe DK. Liu Y, et al. Among authors: schweppe dk. bioRxiv [Preprint]. 2024 Jul 29:2024.07.24.604987. doi: 10.1101/2024.07.24.604987. bioRxiv. 2024. PMID: 39091817 Free PMC article. Preprint.
Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies.
Edman NI, Phal A, Redler RL, Schlichthaerle T, Srivatsan SR, Ehnes DD, Etemadi A, An SJ, Favor A, Li Z, Praetorius F, Gordon M, Vincent T, Marchiano S, Blakely L, Lin C, Yang W, Coventry B, Hicks DR, Cao L, Bethel N, Heine P, Murray A, Gerben S, Carter L, Miranda M, Negahdari B, Lee S, Trapnell C, Zheng Y, Murry CE, Schweppe DK, Freedman BS, Stewart L, Ekiert DC, Schlessinger J, Shendure J, Bhabha G, Ruohola-Baker H, Baker D. Edman NI, et al. Among authors: schweppe dk. Cell. 2024 Jul 11;187(14):3726-3740.e43. doi: 10.1016/j.cell.2024.05.025. Epub 2024 Jun 10. Cell. 2024. PMID: 38861993 Free article.
Large-scale characterization of drug mechanism of action using proteome-wide thermal shift assays.
Van Vranken JG, Li J, Mintseris J, Wei TY, Sniezek CM, Gadzuk-Shea M, Gygi SP, Schweppe DK. Van Vranken JG, et al. Among authors: schweppe dk. bioRxiv [Preprint]. 2024 Aug 14:2024.01.26.577428. doi: 10.1101/2024.01.26.577428. bioRxiv. 2024. Update in: Elife. 2024 Nov 11;13:RP95595. doi: 10.7554/eLife.95595 PMID: 38328090 Free PMC article. Updated. Preprint.
57 results