Ge F - Search Results

1

PRITrans: A Transformer-Based Approach for the Prediction of the Effects of Missense Mutation on Protein-RNA Interactions.

Ge F, Li CF, Zhang CM, Zhang M, Yu DJ. Ge F, et al. Int J Mol Sci. 2024 Nov 17;25(22):12348. doi: 10.3390/ijms252212348. Int J Mol Sci. 2024. PMID: 39596413 Free PMC article.

2

SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.

Chen MC, Li Y, Zhu YH, Ge F, Yu DJ. Chen MC, et al. Among authors: ge f. J Chem Inf Model. 2020 Jun 22;60(6):3295-3303. doi: 10.1021/acs.jcim.9b01207. Epub 2020 May 15. J Chem Inf Model. 2020. PMID: 32338512

3

Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features.

Zhu YH, Hu J, Ge F, Li F, Song J, Zhang Y, Yu DJ. Zhu YH, et al. Among authors: ge f. Brief Bioinform. 2021 May 20;22(3):bbaa076. doi: 10.1093/bib/bbaa076. Brief Bioinform. 2021. PMID: 32436937

4

TargetMM: Accurate Missense Mutation Prediction by Utilizing Local and Global Sequence Information with Classifier Ensemble.

Ge F, Hu J, Zhu YH, Arif M, Yu DJ. Ge F, et al. Comb Chem High Throughput Screen. 2022;25(1):38-52. doi: 10.2174/1386207323666201204140438. Comb Chem High Throughput Screen. 2022. PMID: 33280588

5

DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake Efficiencies.

Arif M, Kabir M, Ahmed S, Khan A, Ge F, Khelifi A, Yu DJ. Arif M, et al. Among authors: ge f. IEEE/ACM Trans Comput Biol Bioinform. 2022 Sep-Oct;19(5):2749-2759. doi: 10.1109/TCBB.2021.3102133. Epub 2022 Oct 10. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 34347603

6

MutTMPredictor: Robust and accurate cascade XGBoost classifier for prediction of mutations in transmembrane proteins.

Ge F, Zhu YH, Xu J, Muhammad A, Song J, Yu DJ. Ge F, et al. Comput Struct Biotechnol J. 2021 Nov 19;19:6400-6416. doi: 10.1016/j.csbj.2021.11.024. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34938415 Free PMC article.

7

Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion.

Ge F, Zhang Y, Xu J, Muhammad A, Song J, Yu DJ. Ge F, et al. Brief Bioinform. 2022 Jan 17;23(1):bbab530. doi: 10.1093/bib/bbab530. Brief Bioinform. 2022. PMID: 34953462 Free PMC article.

8

PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations.

Iqbal S, Ge F, Li F, Akutsu T, Zheng Y, Gasser RB, Yu DJ, Webb GI, Song J. Iqbal S, et al. Among authors: ge f. J Chem Inf Model. 2022 Sep 12;62(17):4270-4282. doi: 10.1021/acs.jcim.2c00799. Epub 2022 Aug 16. J Chem Inf Model. 2022. PMID: 35973091

9

VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants.

Ge F, Li C, Iqbal S, Muhammad A, Li F, Thafar MA, Yan Z, Worachartcheewan A, Xu X, Song J, Yu DJ. Ge F, et al. Brief Bioinform. 2023 Jan 19;24(1):bbac535. doi: 10.1093/bib/bbac535. Brief Bioinform. 2023. PMID: 36528806

10

Prediction of Multiple Types of RNA Modifications via Biological Language Model.

Zhang Y, Ge F, Li F, Yang X, Song J, Yu DJ. Zhang Y, et al. Among authors: ge f. IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):3205-3214. doi: 10.1109/TCBB.2023.3283985. Epub 2023 Oct 9. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 37289599

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