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Page 1
Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools.
Bastian FB, Cammarata AB, Carsanaro S, Detering H, Huang WT, Joye S, Niknejad A, Nyamari M, Mendes de Farias T, Moretti S, Tzivanopoulou M, Wollbrett J, Robinson-Rechavi M. Bastian FB, et al. Nucleic Acids Res. 2024 Dec 5:gkae1118. doi: 10.1093/nar/gkae1118. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39656924
Perspectives on tracking data reuse across biodata resources.
Ross KE, Bastian FB, Buys M, Cook CE, D'Eustachio P, Harrison M, Hermjakob H, Li D, Lord P, Natale DA, Peters B, Sternberg PW, Su AI, Thakur M, Thomas PD, Bateman A; and the UniProt Consortium. Ross KE, et al. Among authors: bastian fb. Bioinform Adv. 2024 Apr 25;4(1):vbae057. doi: 10.1093/bioadv/vbae057. eCollection 2024. Bioinform Adv. 2024. PMID: 38721398 Free PMC article.
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Bastian FB, Roux J, Niknejad A, Comte A, Fonseca Costa SS, de Farias TM, Moretti S, Parmentier G, de Laval VR, Rosikiewicz M, Wollbrett J, Echchiki A, Escoriza A, Gharib WH, Gonzales-Porta M, Jarosz Y, Laurenczy B, Moret P, Person E, Roelli P, Sanjeev K, Seppey M, Robinson-Rechavi M. Bastian FB, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D831-D847. doi: 10.1093/nar/gkaa793. Nucleic Acids Res. 2021. PMID: 33037820 Free PMC article.
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, Robinson-Rechavi M, Sereno PC, Mungall CJ. Haendel MA, et al. Among authors: bastian fb. J Biomed Semantics. 2014 May 19;5:21. doi: 10.1186/2041-1480-5-21. eCollection 2014. J Biomed Semantics. 2014. PMID: 25009735 Free PMC article.
Uncovering hidden duplicated content in public transcriptomics data.
Rosikiewicz M, Comte A, Niknejad A, Robinson-Rechavi M, Bastian FB. Rosikiewicz M, et al. Among authors: bastian fb. Database (Oxford). 2013 Mar 13;2013:bat010. doi: 10.1093/database/bat010. Print 2013. Database (Oxford). 2013. PMID: 23487185 Free PMC article.
vHOG, a multispecies vertebrate ontology of homologous organs groups.
Niknejad A, Comte A, Parmentier G, Roux J, Bastian FB, Robinson-Rechavi M. Niknejad A, et al. Among authors: bastian fb. Bioinformatics. 2012 Apr 1;28(7):1017-20. doi: 10.1093/bioinformatics/bts048. Epub 2012 Jan 27. Bioinformatics. 2012. PMID: 22285560 Free PMC article.