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MirGeneDB 3.0: improved taxonomic sampling, uniform nomenclature of novel conserved microRNA families and updated covariance models.
Clarke AW, Høye E, Hembrom AA, Paynter VM, Vinther J, Wyrożemski Ł, Biryukova I, Formaggioni A, Ovchinnikov V, Herlyn H, Pierce A, Wu C, Aslanzadeh M, Cheneby J, Martinez P, Friedländer MR, Hovig E, Hackenberg M, Umu SU, Johansen M, Peterson KJ, Fromm B. Clarke AW, et al. Among authors: fromm b. Nucleic Acids Res. 2024 Nov 30:gkae1094. doi: 10.1093/nar/gkae1094. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39673268
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D132-D141. doi: 10.1093/nar/gkz885. Nucleic Acids Res. 2020. PMID: 31598695 Free PMC article.
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, Ovchinnikov V, Kang W, Aparicio-Puerta E, Johansen M, Flatmark K, Mathelier A, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D1172. doi: 10.1093/nar/gkz1016. Nucleic Acids Res. 2020. PMID: 31642479 Free PMC article. No abstract available.
MirGeneDB 2.1: toward a complete sampling of all major animal phyla.
Fromm B, Høye E, Domanska D, Zhong X, Aparicio-Puerta E, Ovchinnikov V, Umu SU, Chabot PJ, Kang W, Aslanzadeh M, Tarbier M, Mármol-Sánchez E, Urgese G, Johansen M, Hovig E, Hackenberg M, Friedländer MR, Peterson KJ. Fromm B, et al. Nucleic Acids Res. 2022 Jan 7;50(D1):D204-D210. doi: 10.1093/nar/gkab1101. Nucleic Acids Res. 2022. PMID: 34850127 Free PMC article.
The limits of human microRNA annotation have been met.
Fromm B, Zhong X, Tarbier M, Friedländer MR, Hackenberg M. Fromm B, et al. RNA. 2022 Jun;28(6):781-785. doi: 10.1261/rna.079098.122. Epub 2022 Mar 2. RNA. 2022. PMID: 35236776 Free PMC article.
Quo vadis microRNAs?
Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Fromm B, et al. Trends Genet. 2020 Jul;36(7):461-463. doi: 10.1016/j.tig.2020.03.007. Epub 2020 Apr 16. Trends Genet. 2020. PMID: 32544447
137 results