Provart NJ - Search Results

1

Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research.

Kapoor M, Ventura ES, Walsh A, Sokolov A, George N, Kumari S, Provart NJ, Cole B, Libault M, Tickle T, Warren WC, Koltes JE, Papatheodorou I, Ware D, Harrison PW, Elsik C, Yordanova G, Burdett T, Tuggle CK. Kapoor M, et al. Among authors: provart nj. Front Genet. 2024 Nov 29;15:1460351. doi: 10.3389/fgene.2024.1460351. eCollection 2024. Front Genet. 2024. PMID: 39678381 Free PMC article.

2

Laser Capture Microdissection Transcriptome Reveals Spatiotemporal Tissue Gene Expression Patterns of Medicago truncatula Roots Responding to Rhizobia.

Schnabel E, Thomas J, El-Hawaz R, Gao Y, Poehlman WL, Chavan S, Pasha A, Esteban E, Provart N, Feltus FA, Frugoli J. Schnabel E, et al. Mol Plant Microbe Interact. 2023 Dec;36(12):805-820. doi: 10.1094/MPMI-03-23-0029-R. Epub 2023 Dec 23. Mol Plant Microbe Interact. 2023. PMID: 37717250 Free article.

3

The aerial epidermis is a major site of quinolizidine alkaloid biosynthesis in narrow-leafed lupin.

Frick KM, Lorensen MDBB, Micic N, Esteban E, Pasha A, Schulz A, Provart NJ, Nour-Eldin HH, Bjarnholt N, Janfelt C, Geu-Flores F. Frick KM, et al. Among authors: provart nj. New Phytol. 2025 Jan 14. doi: 10.1111/nph.20384. Online ahead of print. New Phytol. 2025. PMID: 39807565

4

20 years of the Bio-Analytic Resource for Plant Biology.

Sullivan A, Lombardo MN, Pasha A, Lau V, Zhuang JY, Christendat A, Pereira B, Zhao T, Li Y, Wong R, Qureshi FZ, Provart NJ. Sullivan A, et al. Among authors: provart nj. Nucleic Acids Res. 2025 Jan 6;53(D1):D1576-D1586. doi: 10.1093/nar/gkae920. Nucleic Acids Res. 2025. PMID: 39441075 Free PMC article.

5

The transcriptome landscape of developing barley seeds.

Kovacik M, Nowicka A, Zwyrtková J, Strejčková B, Vardanega I, Esteban E, Pasha A, Kaduchová K, Krautsova M, Červenková M, Šafář J, Provart NJ, Simon R, Pecinka A. Kovacik M, et al. Among authors: provart nj. Plant Cell. 2024 Jul 2;36(7):2512-2530. doi: 10.1093/plcell/koae095. Plant Cell. 2024. PMID: 38635902

6

Profiling of the gene expression and alternative splicing landscapes of Eucalyptus grandis.

Fan C, Lyu M, Zeng B, He Q, Wang X, Lu MZ, Liu B, Liu J, Esteban E, Pasha A, Provart NJ, Wang H, Zhang J. Fan C, et al. Among authors: provart nj. Plant Cell Environ. 2024 Apr;47(4):1363-1378. doi: 10.1111/pce.14814. Epub 2024 Jan 15. Plant Cell Environ. 2024. PMID: 38221855

7

A high-resolution gene expression map of the medial and lateral domains of the gynoecium of Arabidopsis.

Luna-García V, Bernal Gallardo JJ, Rethoret-Pasty M, Pasha A, Provart NJ, de Folter S. Luna-García V, et al. Among authors: provart nj. Plant Physiol. 2024 Apr 30;195(1):410-429. doi: 10.1093/plphys/kiad658. Plant Physiol. 2024. PMID: 38088205

8

AGENT for Exploring and Analyzing Gene Regulatory Networks from Arabidopsis.

Lau V, Provart NJ. Lau V, et al. Among authors: provart nj. Methods Mol Biol. 2023;2698:351-360. doi: 10.1007/978-1-0716-3354-0_20. Methods Mol Biol. 2023. PMID: 37682484

9

Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change.

Mahood EH, Bennett AA, Komatsu K, Kruse LH, Lau V, Rahmati Ishka M, Jiang Y, Bravo A, Louie K, Bowen BP, Harrison MJ, Provart NJ, Vatamaniuk OK, Moghe GD. Mahood EH, et al. Among authors: provart nj. Plant J. 2023 May;114(3):463-481. doi: 10.1111/tpj.16160. Epub 2023 Mar 11. Plant J. 2023. PMID: 36880270 Free article.

10

Chromosome-level Genome Assembly of Euphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size.

Johnson AR, Yue Y, Carey SB, Park SJ, Kruse LH, Bao A, Pasha A, Harkess A, Provart NJ, Moghe GD, Frank MH. Johnson AR, et al. Among authors: provart nj. Genome Biol Evol. 2023 Mar 3;15(3):evad018. doi: 10.1093/gbe/evad018. Genome Biol Evol. 2023. PMID: 36757383 Free PMC article.

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