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Page 1
Models of Classroom Assessment for Course-Based Research Experiences.
Hanauer DI, Zhang T, Graham MJ, Adams SD, Ahumada-Santos YP, Alvey RM, Antunes MS, Ayuk MA, Báez-Flores ME, Bancroft CT, Bates TC, Bechman MJ, Behr E, Beyer AR, Bortz RL, Bowder DM, Briggs LA, Brown-Kennerly V, Buckholt MA, Bullock SK, Butela KA, Byrum CA, Caruso SM, Chia CP, Chong RA, Chung HM, Clase KL, Coleman ST, Parks Collins D, Conant SB, Condon BM, Connerly PL, Connors BJ, Cook-Easterwood JE, Crump KE, D'Elia T, Dennis MK, DeVeaux LC, Diacovich L, Duffy I, Edgington NP, Edwards DC, Egwuatu TOG, Eivazova ER, Fallest-Strobl PC, Fillman CL, Findley AM, Fisher E, Fisher MR, Fogarty MP, Freise AC, Frost VJ, Gainey MD, Costas AMG, Garza AA, Gavin HE, Ghittoni R, Gibb B, Golebiewska UP, Grinath AS, R Gurney SM, Hare RF, Heninger SG, Hinz JM, Hughes LE, Jayachandran P, Johnson KC, Johnson AA, Kanther M, Kenna M, Kirkpatrick BL, Klyczek KK, Kohl KP, Kuchka M, LaPeruta AJ, Lee-Soety JY, Lewis LO, Lindberg HM, Madden JA, Markov SA, Mastropaolo MD, Mathur V, McClory SP, Merkhofer EC, Merkle JA, Michael SF, Mitchell JC, Molloy SD, Monti DL, Mussi MA, Nance H, Nieto-Fernandez FE, Nissen JC, Nsa IY, O'Donnell MG, Page ST, Panagakis A, Parra-Unda JR, Pelletier TA, Perez Morales TG, Peters … See abstract for full author list ➔ Hanauer DI, et al. Among authors: shaffer cd. Front Educ (Lausanne). 2023;8:1279921. doi: 10.3389/feduc.2023.1279921. Epub 2023 Nov 27. Front Educ (Lausanne). 2023. PMID: 39687267 Free PMC article.
An inclusive Research Education Community (iREC) Model to Facilitate Undergraduate Science Education Reform.
Monti DL, Gill JC, Adair TL, Adams SD, Ahumada-Santos YP, Amaya I, Anders KR, Anderson JR, Antunes MS, Ayuk MA, Baliraine FN, Bates TC, Beyer AR, Bhalla SS, Bouklas T, Bullock SK, Butela KA, Byrum CA, Caruso SM, Chong RA, Chung HM, Conant SB, Condon BM, Crump KE, D'Elia T, Dennis MK, DeVeaux LC, Diacovich L, Diaz A, Duffy I, Edwards DC, Fallest-Strobl PC, Findley AM, Fisher MR, Fogarty MP, Frost VJ, Gainey MD, Galle CS, Gibb B, Golebiewska UP, Gramajo HC, Grinath AS, Guerrero JA, Guild NA, Gunn KE, Gurney SM, Hughes LE, Jayachandran P, Johnson KC, Johnson AA, Kanak AE, Kanther ML, King RA, Kohl KP, Lee-Soety JY, Lewis LO, Lindberg HM, Madden JA, Martin BJ, Mastropaolo MD, McClory SP, Merkhofer EC, Merkle JA, Mitchell JC, Mussi MA, Nieto-Fernandez FE, Nissen JC, Nsa IY, O'Donnell MG, Overath RD, Page ST, Panagakis A, Parra Unda JR, Pass MB, Morales TGP, Peters NT, Plymale R, Pollenz RS, Reyna NS, Rinehart CA, Rocheleau JM, Rombold JS, Rossier O, Rudner AD, Rueschhoff EE, Shaffer CD, Smith MAV, Sprenkle AB, Sunnen CN, Thomas MA, Tigges MM, Tobiason DM, Tolsma SS, Garcia JT, Uetz P, Vazquez E, Ward CM, Ware VC, Washington JM, Waterman MJ, Westholm DE, Wheaton KA, White SJ, Wil… See abstract for full author list ➔ Monti DL, et al. Among authors: shaffer cd. Front Educ (Lausanne). 2024;9:1442318. doi: 10.3389/feduc.2024.1442318. Epub 2024 Aug 20. Front Educ (Lausanne). 2024. PMID: 39686966 Free PMC article.
Student Attitudes Contribute to the Effectiveness of a Genomics CURE.
Lopatto D, Rosenwald AG, Burgess RC, Silver Key C, Van Stry M, Wawersik M, DiAngelo JR, Hark AT, Skerritt M, Allen AK, Alvarez C, Anderson S, Arrigo C, Arsham A, Barnard D, Bedard JEJ, Bose I, Braverman JM, Burg MG, Croonquist P, Du C, Dubowsky S, Eisler H, Escobar MA, Foulk M, Giarla T, Glaser RL, Goodman AL, Gosser Y, Haberman A, Hauser C, Hays S, Howell CE, Jemc J, Jones CJ, Kadlec L, Kagey JD, Keller KL, Kennell J, Kleinschmit AJ, Kleinschmit M, Kokan NP, Kopp OR, Laakso MM, Leatherman J, Long LJ, Manier M, Martinez-Cruzado JC, Matos LF, McClellan AJ, McNeil G, Merkhofer E, Mingo V, Mistry H, Mitchell E, Mortimer NT, Myka JL, Nagengast A, Overvoorde P, Paetkau D, Paliulis L, Parrish S, Toering Peters S, Preuss ML, Price JV, Pullen NA, Reinke C, Revie D, Robic S, Roecklein-Canfield JA, Rubin MR, Sadikot T, Sanford JS, Santisteban M, Saville K, Schroeder S, Shaffer CD, Sharif KA, Sklensky DE, Small C, Smith S, Spokony R, Sreenivasan A, Stamm J, Sterne-Marr R, Teeter KC, Thackeray J, Thompson JS, Velazquez-Ulloa N, Wolfe C, Youngblom J, Yowler B, Zhou L, Brennan J, Buhler J, Leung W, Elgin SCR, Reed LK. Lopatto D, et al. Among authors: shaffer cd. J Microbiol Biol Educ. 2022 May 16;23(2):e00208-21. doi: 10.1128/jmbe.00208-21. eCollection 2022 Aug. J Microbiol Biol Educ. 2022. PMID: 36061313 Free PMC article.
Instructional Models for Course-Based Research Experience (CRE) Teaching.
Hanauer DI, Graham MJ, Arnold RJ, Ayuk MA, Balish MF, Beyer AR, Butela KA, Byrum CA, Chia CP, Chung HM, Clase KL, Conant S, Coomans RJ, D'Elia T, Diaz J, Diaz A, Doty JA, Edgington NP, Edwards DC, Eivazova E, Emmons CB, Fast KM, Fisher EJ, Fleischacker CL, Frederick GD, Freise AC, Gainey MD, Gissendanner CR, Golebiewska UP, Guild NA, Hendrickson HL, Herren CD, Hopson-Fernandes MS, Hughes LE, Jacobs-Sera D, Johnson AA, Kirkpatrick BL, Klyczek KK, Koga AP, Kotturi H, LeBlanc-Straceski J, Lee-Soety JY, Leonard JE, Mastropaolo MD, Merkhofer EC, Michael SF, Mitchell JC, Mohan S, Monti DL, Noutsos C, Nsa IY, Peters NT, Plymale R, Pollenz RS, Porter ML, Rinehart CA, Rosas-Acosta G, Ross JF, Rubin MR, Scherer AE, Schroeder SC, Shaffer CD, Sprenkle AB, Sunnen CN, Swerdlow SJ, Tobiason D, Tolsma SS, Tsourkas PK, Ward RE, Ware VC, Warner MH, Washington JM, Westover KM, White SJ, Whitefleet-Smith JL, Williams DC, Wolyniak MJ, Zeilstra-Ryalls JH, Asai DJ, Hatfull GF, Sivanathan V. Hanauer DI, et al. Among authors: shaffer cd. CBE Life Sci Educ. 2022 Mar;21(1):ar8. doi: 10.1187/cbe.21-03-0057. CBE Life Sci Educ. 2022. PMID: 34978921 Free PMC article.
Genomic diversity of bacteriophages infecting Microbacterium spp.
Jacobs-Sera D, Abad LA, Alvey RM, Anders KR, Aull HG, Bhalla SS, Blumer LS, Bollivar DW, Bonilla JA, Butela KA, Coomans RJ, Cresawn SG, D'Elia T, Diaz A, Divens AM, Edgington NP, Frederick GD, Gainey MD, Garlena RA, Grant KW, Gurney SMR, Hendrickson HL, Hughes LE, Kenna MA, Klyczek KK, Kotturi H, Mavrich TN, McKinney AL, Merkhofer EC, Moberg Parker J, Molloy SD, Monti DL, Pape-Zambito DA, Pollenz RS, Pope WH, Reyna NS, Rinehart CA, Russell DA, Shaffer CD, Sivanathan V, Stoner TH, Stukey J, Sunnen CN, Tolsma SS, Tsourkas PK, Wallen JR, Ware VC, Warner MH, Washington JM, Westover KM, Whitefleet-Smith JL, Wiersma-Koch HI, Williams DC, Zack KM, Hatfull GF. Jacobs-Sera D, et al. Among authors: shaffer cd. PLoS One. 2020 Jun 18;15(6):e0234636. doi: 10.1371/journal.pone.0234636. eCollection 2020. PLoS One. 2020. PMID: 32555720 Free PMC article.
Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience.
Lopatto D, Rosenwald AG, DiAngelo JR, Hark AT, Skerritt M, Wawersik M, Allen AK, Alvarez C, Anderson S, Arrigo C, Arsham A, Barnard D, Bazinet C, Bedard JEJ, Bose I, Braverman JM, Burg MG, Burgess RC, Croonquist P, Du C, Dubowsky S, Eisler H, Escobar MA, Foulk M, Furbee E, Giarla T, Glaser RL, Goodman AL, Gosser Y, Haberman A, Hauser C, Hays S, Howell CE, Jemc J, Johnson ML, Jones CJ, Kadlec L, Kagey JD, Keller KL, Kennell J, Key SCS, Kleinschmit AJ, Kleinschmit M, Kokan NP, Kopp OR, Laakso MM, Leatherman J, Long LJ, Manier M, Martinez-Cruzado JC, Matos LF, McClellan AJ, McNeil G, Merkhofer E, Mingo V, Mistry H, Mitchell E, Mortimer NT, Mukhopadhyay D, Myka JL, Nagengast A, Overvoorde P, Paetkau D, Paliulis L, Parrish S, Preuss ML, Price JV, Pullen NA, Reinke C, Revie D, Robic S, Roecklein-Canfield JA, Rubin MR, Sadikot T, Sanford JS, Santisteban M, Saville K, Schroeder S, Shaffer CD, Sharif KA, Sklensky DE, Small C, Smith M, Smith S, Spokony R, Sreenivasan A, Stamm J, Sterne-Marr R, Teeter KC, Thackeray J, Thompson JS, Peters ST, Van Stry M, Velazquez-Ulloa N, Wolfe C, Youngblom J, Yowler B, Zhou L, Brennan J, Buhler J, Leung W, Reed LK, Elgin SCR. Lopatto D, et al. Among authors: shaffer cd. J Microbiol Biol Educ. 2020 Feb 28;21(1):21.1.6. doi: 10.1128/jmbe.v21i1.2005. eCollection 2020. J Microbiol Biol Educ. 2020. PMID: 32148609 Free PMC article.
Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species.
Hughes LE, Shaffer CD, Ware VC, Aguayo I, Aziz RM, Bhuiyan S, Bindert IS, Calovich-Benne CK, Chapman J, Donegan-Quick R, Farooq A, Garcia C, Graham LH, Green BY, Kenna MA, Kneeream ER, Laing CE, Mageeney CM, Meridew SN, Mikolon AR, Morgan RE, Nayek S, Olugbade ID, Pike KC, Schlegel LE, Shishido TC, Suresh T, Suri N, Weston Hafer K, Garlena RA, Russell DA, Cresawn SG, Pope WH, Jacobs-Sera D, Hatfull GF. Hughes LE, et al. Among authors: shaffer cd. Genome Announc. 2018 Jan 11;6(2):e01146-17. doi: 10.1128/genomeA.01146-17. Genome Announc. 2018. PMID: 29326201 Free PMC article.
Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element.
Leung W, Shaffer CD, Chen EJ, Quisenberry TJ, Ko K, Braverman JM, Giarla TC, Mortimer NT, Reed LK, Smith ST, Robic S, McCartha SR, Perry DR, Prescod LM, Sheppard ZA, Saville KJ, McClish A, Morlock EA, Sochor VR, Stanton B, Veysey-White IC, Revie D, Jimenez LA, Palomino JJ, Patao MD, Patao SM, Himelblau ET, Campbell JD, Hertz AL, McEvilly MF, Wagner AR, Youngblom J, Bedi B, Bettincourt J, Duso E, Her M, Hilton W, House S, Karimi M, Kumimoto K, Lee R, Lopez D, Odisho G, Prasad R, Robbins HL, Sandhu T, Selfridge T, Tsukashima K, Yosif H, Kokan NP, Britt L, Zoellner A, Spana EP, Chlebina BT, Chong I, Friedman H, Mammo DA, Ng CL, Nikam VS, Schwartz NU, Xu TQ, Burg MG, Batten SM, Corbeill LM, Enoch E, Ensign JJ, Franks ME, Haiker B, Ingles JA, Kirkland LD, Lorenz-Guertin JM, Matthews J, Mittig CM, Monsma N, Olson KJ, Perez-Aragon G, Ramic A, Ramirez JR, Scheiber C, Schneider PA, Schultz DE, Simon M, Spencer E, Wernette AC, Wykle ME, Zavala-Arellano E, McDonald MJ, Ostby K, Wendland P, DiAngelo JR, Ceasrine AM, Cox AH, Docherty JEB, Gingras RM, Grieb SM, Pavia MJ, Personius CL, Polak GL, Beach DL, Cerritos HL, Horansky EA, Sharif KA, Moran R, Parrish S, Bickford K, Bland J, Brouss… See abstract for full author list ➔ Leung W, et al. Among authors: shaffer cd. G3 (Bethesda). 2017 Aug 7;7(8):2439-2460. doi: 10.1534/g3.117.040907. G3 (Bethesda). 2017. PMID: 28667019 Free PMC article.
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course. Pope WH, et al. Elife. 2015 Apr 28;4:e06416. doi: 10.7554/eLife.06416. Elife. 2015. PMID: 25919952 Free PMC article.
33 results