Kubat Z - Search Results

1

Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.

Horvath J, Jedlicka P, Kratka M, Kubat Z, Kejnovsky E, Lexa M. Horvath J, et al. Among authors: kubat z. BioData Min. 2024 Dec 18;17(1):57. doi: 10.1186/s13040-024-00410-z. BioData Min. 2024. PMID: 39696434 Free PMC article.

2

HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.

Lexa M, Cechova M, Nguyen SH, Jedlicka P, Tokan V, Kubat Z, Hobza R, Kejnovsky E. Lexa M, et al. Among authors: kubat z. Bioinformatics. 2022 Aug 10;38(16):4030-4032. doi: 10.1093/bioinformatics/btac442. Bioinformatics. 2022. PMID: 35781332

3

Retand: a novel family of gypsy-like retrotransposons harboring an amplified tandem repeat.

Kejnovsky E, Kubat Z, Macas J, Hobza R, Mracek J, Vyskot B. Kejnovsky E, et al. Among authors: kubat z. Mol Genet Genomics. 2006 Sep;276(3):254-63. doi: 10.1007/s00438-006-0140-x. Epub 2006 Jul 7. Mol Genet Genomics. 2006. PMID: 16826419

4

High intrachromosomal similarity of retrotransposon long terminal repeats: evidence for homogenization by gene conversion on plant sex chromosomes?

Kejnovsky E, Hobza R, Kubat Z, Widmer A, Marais GA, Vyskot B. Kejnovsky E, et al. Among authors: kubat z. Gene. 2007 Apr 1;390(1-2):92-7. doi: 10.1016/j.gene.2006.10.007. Epub 2006 Oct 24. Gene. 2007. PMID: 17134852

5

Microsatellite accumulation on the Y chromosome in Silene latifolia.

Kubat Z, Hobza R, Vyskot B, Kejnovsky E. Kubat Z, et al. Genome. 2008 May;51(5):350-6. doi: 10.1139/G08-024. Genome. 2008. PMID: 18438438

6

Fully automated pipeline for detection of sex linked genes using RNA-Seq data.

Michalovova M, Kubat Z, Hobza R, Vyskot B, Kejnovsky E. Michalovova M, et al. Among authors: kubat z. BMC Bioinformatics. 2015 Mar 11;16(1):78. doi: 10.1186/s12859-015-0509-0. BMC Bioinformatics. 2015. PMID: 25884927 Free PMC article.

7

The slowdown of Y chromosome expansion in dioecious Silene latifolia due to DNA loss and male-specific silencing of retrotransposons.

Puterova J, Kubat Z, Kejnovsky E, Jesionek W, Cizkova J, Vyskot B, Hobza R. Puterova J, et al. Among authors: kubat z. BMC Genomics. 2018 Feb 20;19(1):153. doi: 10.1186/s12864-018-4547-7. BMC Genomics. 2018. PMID: 29458354 Free PMC article.

8

Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia.

Kejnovsky E, Kubat Z, Hobza R, Lengerova M, Sato S, Tabata S, Fukui K, Matsunaga S, Vyskot B. Kejnovsky E, et al. Among authors: kubat z. Genetica. 2006 Sep-Nov;128(1-3):167-75. doi: 10.1007/s10709-005-5701-0. Genetica. 2006. PMID: 17028949

9

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

Cermak T, Kubat Z, Hobza R, Koblizkova A, Widmer A, Macas J, Vyskot B, Kejnovsky E. Cermak T, et al. Among authors: kubat z. Chromosome Res. 2008;16(7):961-76. doi: 10.1007/s10577-008-1254-2. Epub 2008 Oct 15. Chromosome Res. 2008. PMID: 18853265

10

The role of repetitive DNA in structure and evolution of sex chromosomes in plants.

Kejnovsky E, Hobza R, Cermak T, Kubat Z, Vyskot B. Kejnovsky E, et al. Among authors: kubat z. Heredity (Edinb). 2009 Jun;102(6):533-41. doi: 10.1038/hdy.2009.17. Epub 2009 Mar 11. Heredity (Edinb). 2009. PMID: 19277056 Review.

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