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HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling.
Otoničar J, Lazareva O, Mallm JP, Simovic-Lorenz M, Philippos G, Sant P, Parekh U, Hammann L, Li A, Yildiz U, Marttinen M, Zaugg J, Noh KM, Stegle O, Ernst A. Otoničar J, et al. Among authors: lazareva o. Genome Biol. 2024 Dec 18;25(1):316. doi: 10.1186/s13059-024-03450-0. Genome Biol. 2024. PMID: 39696535 Free PMC article.
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pastrello C, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang RS, Zolotareva O, Baumbach J. Maier A, et al. Among authors: lazareva o. Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388. Nucleic Acids Res. 2024. PMID: 38783119 Free PMC article.
Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Helmy M, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, List M, Lobentanzer S, Loscalzo J, Malod-Dognin N, Manz Q, Matschinske J, Mee M, Oubounyt M, Pico AR, Pillich RT, Poschenrieder JM, Pratt D, Pržulj N, Sadegh S, Saez-Rodriguez J, Sarkar S, Shaked G, Shamir R, Trummer N, Turhan U, Wang R, Zolotareva O, Baumbach J. Maier A, et al. Among authors: lazareva o. ArXiv [Preprint]. 2023 Jul 4:arXiv:2305.15453v2. ArXiv. 2023. Update in: Nucleic Acids Res. 2024 Jul 5;52(W1):W481-W488. doi: 10.1093/nar/gkae388 PMID: 37332567 Free PMC article. Updated. Preprint.
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors.
Hoffmann M, Trummer N, Schwartz L, Jankowski J, Lee HK, Willruth LL, Lazareva O, Yuan K, Baumgarten N, Schmidt F, Baumbach J, Schulz MH, Blumenthal DB, Hennighausen L, List M. Hoffmann M, et al. Among authors: lazareva o. Gigascience. 2022 Dec 28;12:giad026. doi: 10.1093/gigascience/giad026. Epub 2023 May 3. Gigascience. 2022. PMID: 37132521 Free PMC article.
Network medicine for disease module identification and drug repurposing with the NeDRex platform.
Sadegh S, Skelton J, Anastasi E, Bernett J, Blumenthal DB, Galindez G, Salgado-Albarrán M, Lazareva O, Flanagan K, Cockell S, Nogales C, Casas AI, Schmidt HHHW, Baumbach J, Wipat A, Kacprowski T. Sadegh S, et al. Among authors: lazareva o. Nat Commun. 2021 Nov 25;12(1):6848. doi: 10.1038/s41467-021-27138-2. Nat Commun. 2021. PMID: 34824199 Free PMC article.
80 results