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SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes.
Nasir JA, Maguire F, Smith KM, Panousis EM, Baker SJC, Aftanas P, Raphenya AR, Alcock BP, Maan H, Knox NC, Banerjee A, Mossman K, Wang B, Simpson JT, Kozak RA, Mubareka S, McArthur AG. Nasir JA, et al. Among authors: mcarthur ag. NAR Genom Bioinform. 2024 Dec 18;6(4):lqae176. doi: 10.1093/nargab/lqae176. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39703420 Free PMC article.
Genotyping SARS-CoV-2 through an interactive web application.
Maan H, Mbareche H, Raphenya AR, Banerjee A, Nasir JA, Kozak RA, Knox N, Mubareka S, McArthur AG, Wang B. Maan H, et al. Among authors: mcarthur ag. Lancet Digit Health. 2020 Jul;2(7):e340-e341. doi: 10.1016/S2589-7500(20)30140-0. Epub 2020 Jun 12. Lancet Digit Health. 2020. PMID: 32835191 Free PMC article. No abstract available.
Evolutionary trajectory of SARS-CoV-2 and emerging variants.
Singh J, Pandit P, McArthur AG, Banerjee A, Mossman K. Singh J, et al. Among authors: mcarthur ag. Virol J. 2021 Aug 13;18(1):166. doi: 10.1186/s12985-021-01633-w. Virol J. 2021. PMID: 34389034 Free PMC article. Review.
SARS-CoV-2 Outbreak Investigation Using Contact Tracing and Whole-Genome Sequencing in an Ontario Tertiary Care Hospital.
Tsang KK, Ahmad S, Aljarbou A, Al Salem M, Baker SJC, Panousis EM, Derakhshani H, Rossi L, Nasir JA, Bulir DC, Surette MG, Lee RS, Smaill F, Mertz D, McArthur AG, Khan S. Tsang KK, et al. Among authors: mcarthur ag. Microbiol Spectr. 2023 Jun 15;11(3):e0190022. doi: 10.1128/spectrum.01900-22. Epub 2023 Apr 24. Microbiol Spectr. 2023. PMID: 37093060 Free PMC article.
Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses.
Banerjee A, El-Sayes N, Budylowski P, Jacob RA, Richard D, Maan H, Aguiar JA, Demian WL, Baid K, D'Agostino MR, Ang JC, Murdza T, Tremblay BJ, Afkhami S, Karimzadeh M, Irving AT, Yip L, Ostrowski M, Hirota JA, Kozak R, Capellini TD, Miller MS, Wang B, Mubareka S, McGeer AJ, McArthur AG, Doxey AC, Mossman K. Banerjee A, et al. Among authors: mcarthur ag. iScience. 2021 May 21;24(5):102477. doi: 10.1016/j.isci.2021.102477. Epub 2021 Apr 26. iScience. 2021. PMID: 33937724 Free PMC article.
Surface and Air Contamination With Severe Acute Respiratory Syndrome Coronavirus 2 From Hospitalized Coronavirus Disease 2019 Patients in Toronto, Canada, March-May 2020.
Kotwa JD, Jamal AJ, Mbareche H, Yip L, Aftanas P, Barati S, Bell NG, Bryce E, Coomes E, Crowl G, Duchaine C, Faheem A, Farooqi L, Hiebert R, Katz K, Khan S, Kozak R, Li AX, Mistry HP, Mozafarihashjin M, Nasir JA, Nirmalarajah K, Panousis EM, Paterson A, Plenderleith S, Powis J, Prost K, Schryer R, Taylor M, Veillette M, Wong T, Zoe Zhong X, McArthur AG, McGeer AJ, Mubareka S. Kotwa JD, et al. Among authors: mcarthur ag. J Infect Dis. 2022 Mar 2;225(5):768-776. doi: 10.1093/infdis/jiab578. J Infect Dis. 2022. PMID: 34850051 Free PMC article.
Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents.
Sanderson H, Gray KL, Manuele A, Maguire F, Khan A, Liu C, Navanekere Rudrappa C, Nash JHE, Robertson J, Bessonov K, Oloni M, Alcock BP, Raphenya AR, McAllister TA, Peacock SJ, Raven KE, Gouliouris T, McArthur AG, Brinkman FSL, Fink RC, Zaheer R, Beiko RG. Sanderson H, et al. Among authors: mcarthur ag. Microb Genom. 2022 Sep;8(9):mgen000880. doi: 10.1099/mgen.0.000880. Microb Genom. 2022. PMID: 36129737 Free PMC article.
99 results