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SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes.
Nasir JA, Maguire F, Smith KM, Panousis EM, Baker SJC, Aftanas P, Raphenya AR, Alcock BP, Maan H, Knox NC, Banerjee A, Mossman K, Wang B, Simpson JT, Kozak RA, Mubareka S, McArthur AG. Nasir JA, et al. Among authors: mubareka s. NAR Genom Bioinform. 2024 Dec 18;6(4):lqae176. doi: 10.1093/nargab/lqae176. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39703420 Free PMC article.
Genotyping SARS-CoV-2 through an interactive web application.
Maan H, Mbareche H, Raphenya AR, Banerjee A, Nasir JA, Kozak RA, Knox N, Mubareka S, McArthur AG, Wang B. Maan H, et al. Among authors: mubareka s. Lancet Digit Health. 2020 Jul;2(7):e340-e341. doi: 10.1016/S2589-7500(20)30140-0. Epub 2020 Jun 12. Lancet Digit Health. 2020. PMID: 32835191 Free PMC article. No abstract available.
Experimental and natural evidence of SARS-CoV-2-infection-induced activation of type I interferon responses.
Banerjee A, El-Sayes N, Budylowski P, Jacob RA, Richard D, Maan H, Aguiar JA, Demian WL, Baid K, D'Agostino MR, Ang JC, Murdza T, Tremblay BJ, Afkhami S, Karimzadeh M, Irving AT, Yip L, Ostrowski M, Hirota JA, Kozak R, Capellini TD, Miller MS, Wang B, Mubareka S, McGeer AJ, McArthur AG, Doxey AC, Mossman K. Banerjee A, et al. Among authors: mubareka s. iScience. 2021 May 21;24(5):102477. doi: 10.1016/j.isci.2021.102477. Epub 2021 Apr 26. iScience. 2021. PMID: 33937724 Free PMC article.
Surface and Air Contamination With Severe Acute Respiratory Syndrome Coronavirus 2 From Hospitalized Coronavirus Disease 2019 Patients in Toronto, Canada, March-May 2020.
Kotwa JD, Jamal AJ, Mbareche H, Yip L, Aftanas P, Barati S, Bell NG, Bryce E, Coomes E, Crowl G, Duchaine C, Faheem A, Farooqi L, Hiebert R, Katz K, Khan S, Kozak R, Li AX, Mistry HP, Mozafarihashjin M, Nasir JA, Nirmalarajah K, Panousis EM, Paterson A, Plenderleith S, Powis J, Prost K, Schryer R, Taylor M, Veillette M, Wong T, Zoe Zhong X, McArthur AG, McGeer AJ, Mubareka S. Kotwa JD, et al. Among authors: mubareka s. J Infect Dis. 2022 Mar 2;225(5):768-776. doi: 10.1093/infdis/jiab578. J Infect Dis. 2022. PMID: 34850051 Free PMC article.
Immunogenicity of convalescent and vaccinated sera against clinical isolates of ancestral SARS-CoV-2, Beta, Delta, and Omicron variants.
Banerjee A, Lew J, Kroeker A, Baid K, Aftanas P, Nirmalarajah K, Maguire F, Kozak R, McDonald R, Lang A, Gerdts V, Straus SE, Gilbert L, Li AX, Mozafarihashjin M, Walmsley S, Gingras AC, Wrana JL, Mazzulli T, Colwill K, McGeer AJ, Mubareka S, Falzarano D. Banerjee A, et al. Among authors: mubareka s. Med. 2022 Jun 10;3(6):422-432.e3. doi: 10.1016/j.medj.2022.04.002. Epub 2022 Apr 14. Med. 2022. PMID: 35437520 Free PMC article.
175 results