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SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes.
Nasir JA, Maguire F, Smith KM, Panousis EM, Baker SJC, Aftanas P, Raphenya AR, Alcock BP, Maan H, Knox NC, Banerjee A, Mossman K, Wang B, Simpson JT, Kozak RA, Mubareka S, McArthur AG. Nasir JA, et al. Among authors: wang b. NAR Genom Bioinform. 2024 Dec 18;6(4):lqae176. doi: 10.1093/nargab/lqae176. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39703420 Free PMC article.
The molecular consequences of androgen activity in the human breast.
Raths F, Karimzadeh M, Ing N, Martinez A, Yang Y, Qu Y, Lee TY, Mulligan B, Devkota S, Tilley WT, Hickey TE, Wang B, Giuliano AE, Bose S, Goodarzi H, Ray EC, Cui X, Knott SRV. Raths F, et al. Among authors: wang b. Cell Genom. 2023 Mar 8;3(3):100272. doi: 10.1016/j.xgen.2023.100272. eCollection 2023 Mar 8. Cell Genom. 2023. PMID: 36950379 Free PMC article.
MethylGPT: a foundation model for the DNA methylome.
Ying K, Song J, Cui H, Zhang Y, Li S, Chen X, Liu H, Eames A, McCartney DL, Marioni RE, Poganik JR, Moqri M, Wang B, Gladyshev VN. Ying K, et al. Among authors: wang b. bioRxiv [Preprint]. 2024 Nov 4:2024.10.30.621013. doi: 10.1101/2024.10.30.621013. bioRxiv. 2024. PMID: 39574641 Free PMC article. Preprint.
Integrative identification of non-coding regulatory regions driving metastatic prostate cancer.
Woo BJ, Moussavi-Baygi R, Karner H, Karimzadeh M, Garcia K, Joshi T, Yin K, Navickas A, Gilbert LA, Wang B, Asgharian H, Feng FY, Goodarzi H. Woo BJ, et al. Among authors: wang b. bioRxiv [Preprint]. 2023 Jun 2:2023.04.14.535921. doi: 10.1101/2023.04.14.535921. bioRxiv. 2023. Update in: Cell Rep. 2024 Sep 24;43(9):114764. doi: 10.1016/j.celrep.2024.114764 PMID: 37398273 Free PMC article. Updated. Preprint.
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