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Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing.
Shippy TD, Hosmani PS, Flores-Gonzalez M, Mann M, Miller S, Weirauch MT, Vosberg C, Massimino C, Tank W, de Oliveira L, Chen C, Hoyt S, Adams R, Adkins S, Bailey ST, Chen X, Davis N, DeLaFlor Y, Espino M, Gervais K, Grace R, Harper D, Hasan DL, Hoang M, Holcomb R, Jernigan MR, Kemp M, Kennedy B, Kercher K, Klaessan S, Kruse A, Licata S, Lu A, Masse R, Mathew A, Michels S, Michels E, Neiman A, Norman S, Norus J, Ortiz Y, Panitz N, Paris T, Perentesis KMR, Perry M, Reynolds M, Sena MM, Tamayo B, Thate A, Vandervoort S, Ventura J, Weis N, Wise T, Shatters RG Jr, Heck M, Benoit JB, Hunter WB, Mueller LA, Brown SJ, D'Elia T, Saha S. Shippy TD, et al. Among authors: d elia t. Gigascience. 2024 Jan 2;13:giae109. doi: 10.1093/gigascience/giae109. Gigascience. 2024. PMID: 39704701 Free PMC article.
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.
Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, Nandyal S, Mahoney R, Van Voorhis J, Dunlevy M, Farrow D, Hunter D, Morgan T, Shore K, Guzman V, Izsak A, Dixon DE, Cridge A, Cano L, Cao X, Jiang H, Leng N, Johnson S, Cantarel BL, Richards S, English A, Shatters RG, Childers C, Chen MJ, Hunter W, Cilia M, Mueller LA, Munoz-Torres M, Nelson D, Poelchau MF, Benoit JB, Wiersma-Koch H, D'Elia T, Brown SJ. Saha S, et al. Database (Oxford). 2017 Jan 1;2017:bax032. doi: 10.1093/database/bax032. Database (Oxford). 2017. PMID: 29220441 Free PMC article.
Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae).
Reynolds M, de Oliveira L, Vosburg C, Paris T, Massimino C, Norus J, Ortiz Y, Espino M, Davis N, Masse R, Neiman A, Holcomb R, Gervais K, Kemp M, Hoang M, Shippy TD, Hosmani PS, Flores-Gonzalez M, Pelz-Stelinski K, Qureshi JA, Mueller LA, Hunter WB, Benoit JB, Brown SJ, D'Elia T, Saha S. Reynolds M, et al. Among authors: d elia t. GigaByte. 2022 Apr 1;2022:gigabyte48. doi: 10.46471/gigabyte.48. eCollection 2022. GigaByte. 2022. PMID: 36824532 Free PMC article.
A quick guide for student-driven community genome annotation.
Hosmani PS, Shippy T, Miller S, Benoit JB, Munoz-Torres M, Flores-Gonzalez M, Mueller LA, Wiersma-Koch H, D'Elia T, Brown SJ, Saha S. Hosmani PS, et al. PLoS Comput Biol. 2019 Apr 3;15(4):e1006682. doi: 10.1371/journal.pcbi.1006682. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30943207 Free PMC article.
53 results