Shim H - Search Results

1

Going beyond cell clustering and feature aggregation: Is there single cell level information in single-cell ATAC-seq data?

Kwok AWC, Shim H, McCarthy DJ. Kwok AWC, et al. Among authors: shim h. bioRxiv [Preprint]. 2024 Dec 9:2024.12.04.626927. doi: 10.1101/2024.12.04.626927. bioRxiv. 2024. PMID: 39713401 Free PMC article. Preprint.

2

Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics.

Li H, McCarthy DJ, Shim H, Wei S. Li H, et al. Among authors: shim h. BMC Bioinformatics. 2022 Nov 3;23(1):460. doi: 10.1186/s12859-022-05003-3. BMC Bioinformatics. 2022. PMID: 36329399 Free PMC article.

3

sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.

Lyu R, Tsui V, Crismani W, Liu R, Shim H, McCarthy DJ. Lyu R, et al. Among authors: shim h. Nucleic Acids Res. 2022 Nov 11;50(20):e118. doi: 10.1093/nar/gkac764. Nucleic Acids Res. 2022. PMID: 36107768 Free PMC article.

4

A paradoxical population structure of var DBLα types in Africa.

Tan MH, Tiedje KE, Feng Q, Zhan Q, Pascual M, Shim H, Chan YB, Day KP. Tan MH, et al. Among authors: shim h. bioRxiv [Preprint]. 2023 Nov 7:2023.11.05.565723. doi: 10.1101/2023.11.05.565723. bioRxiv. 2023. PMID: 37986738 Free PMC article. Preprint.

5

Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE.

You Y, Prawer YDJ, De Paoli-Iseppi R, Hunt CPJ, Parish CL, Shim H, Clark MB. You Y, et al. Among authors: shim h. Genome Biol. 2023 Apr 6;24(1):66. doi: 10.1186/s13059-023-02907-y. Genome Biol. 2023. PMID: 37024980 Free PMC article.

6

Noncanonical role of Golgi-associated macrophage TAZ in chronic inflammation and tumorigenesis.

Park SY, Ju S, Lee J, Kim HR, Sub Y, Park DJ, Park S, Kwon D, Kang HG, Shin JE, Kim DH, Paik JE, Cho SC, Shim H, Kim YJ, Guan KL, Chun KH, Choi J, Ha SJ, Gee HY, Roe JS, Lee HW, Park SY, Park HW. Park SY, et al. Among authors: shim h. Sci Adv. 2025 Jan 24;11(4):eadq2395. doi: 10.1126/sciadv.adq2395. Epub 2025 Jan 22. Sci Adv. 2025. PMID: 39841821 Free article.

7

Protein-ligand binding affinity prediction using multi-instance learning with docking structures.

Kim H, Shim H, Ranganath A, He S, Stevenson G, Allen JE. Kim H, et al. Among authors: shim h. Front Pharmacol. 2025 Jan 3;15:1518875. doi: 10.3389/fphar.2024.1518875. eCollection 2024. Front Pharmacol. 2025. PMID: 39830331 Free PMC article.

8

NNFit: A Self-Supervised Deep Learning Method for Accelerated Quantification of High- Resolution Short Echo Time MR Spectroscopy Datasets.

Giuffrida AS, Sheriff S, Huang V, Weinberg BD, Cooper LAD, Liu Y, Soher BJ, Treadway M, Maudsley AA, Shim H. Giuffrida AS, et al. Among authors: shim h. Radiol Artif Intell. 2025 Jan 15:e230579. doi: 10.1148/ryai.230579. Online ahead of print. Radiol Artif Intell. 2025. PMID: 39812584

9

Continuous single-ended depth-of-interaction measurement using highly multiplexed signals and artificial neural networks.

Shim HS, Cho MJ, Lee MS, Lee JS. Shim HS, et al. Phys Med Biol. 2025 Jan 14. doi: 10.1088/1361-6560/adaa4b. Online ahead of print. Phys Med Biol. 2025. PMID: 39808925

10

Engineered GM-CSF polarizes protumorigenic tumor-associated macrophages to an antitumorigenic phenotype and potently synergizes with IL-12 immunotherapy.

Kang S, Mansurov A, Kurtanich T, Chun HR, Slezak AJ, Volpatti LR, Chang K, Wang T, Alpar AT, Refvik KC, Hansen OI, Borjas GJ, Berg BTK, Shim HN, Hultgren KT, Gomes S, Wang Y, Solanki A, Ishihara J, Swartz MA, Hubbell JA. Kang S, et al. Among authors: shim hn. J Immunother Cancer. 2024 Dec 22;12(12):e009541. doi: 10.1136/jitc-2024-009541. J Immunother Cancer. 2024. PMID: 39794939 Free PMC article.

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