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Page 1
LDB1 establishes multi-enhancer networks to regulate gene expression.
Aboreden NG, Lam JC, Goel VY, Wang S, Wang X, Midla SC, Quijano A, Keller CA, Giardine BM, Hardison RC, Zhang H, Hansen AS, Blobel GA. Aboreden NG, et al. Among authors: giardine bm. Mol Cell. 2024 Dec 18:S1097-2765(24)00992-4. doi: 10.1016/j.molcel.2024.11.037. Online ahead of print. Mol Cell. 2024. PMID: 39721581
LDB1 establishes multi-enhancer networks to regulate gene expression.
Aboreden NG, Lam JC, Goel VY, Wang S, Wang X, Midla SC, Quijano A, Keller CA, Giardine BM, Hardison RC, Zhang H, Hansen AS, Blobel GA. Aboreden NG, et al. Among authors: giardine bm. bioRxiv [Preprint]. 2024 Aug 24:2024.08.23.609430. doi: 10.1101/2024.08.23.609430. bioRxiv. 2024. PMID: 39229045 Free PMC article. Preprint.
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
Xiang G, He X, Giardine BM, Isaac KJ, Taylor DJ, McCoy RC, Jansen C, Keller CA, Wixom AQ, Cockburn A, Miller A, Qi Q, He Y, Li Y, Lichtenberg J, Heuston EF, Anderson SM, Luan J, Vermunt MW, Yue F, Sauria MEG, Schatz MC, Taylor J, Göttgens B, Hughes JR, Higgs DR, Weiss MJ, Cheng Y, Blobel GA, Bodine DM, Zhang Y, Li Q, Mahony S, Hardison RC. Xiang G, et al. Among authors: giardine bm. Genome Res. 2024 Aug 20;34(7):1089-1105. doi: 10.1101/gr.277950.123. Genome Res. 2024. PMID: 38951027 Free PMC article.
Genome folding principles uncovered in condensin-depleted mitotic chromosomes.
Zhao H, Lin Y, Lin E, Liu F, Shu L, Jing D, Wang B, Wang M, Shan F, Zhang L, Lam JC, Midla SC, Giardine BM, Keller CA, Hardison RC, Blobel GA, Zhang H. Zhao H, et al. Among authors: giardine bm. Nat Genet. 2024 Jun;56(6):1213-1224. doi: 10.1038/s41588-024-01759-x. Epub 2024 May 27. Nat Genet. 2024. PMID: 38802567
Genome folding principles revealed in condensin-depleted mitotic chromosomes.
Zhao H, Lin Y, Lin E, Liu F, Shu L, Jing D, Wang B, Wang M, Shan F, Zhang L, Lam JC, Midla SC, Giardine BM, Keller CA, Hardison RC, Blobel GA, Zhang H. Zhao H, et al. Among authors: giardine bm. bioRxiv [Preprint]. 2023 Nov 13:2023.11.09.566494. doi: 10.1101/2023.11.09.566494. bioRxiv. 2023. Update in: Nat Genet. 2024 Jun;56(6):1213-1224. doi: 10.1038/s41588-024-01759-x PMID: 38014261 Free PMC article. Updated. Preprint.
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.
Xiang G, He X, Giardine BM, Isaac KJ, Taylor DJ, McCoy RC, Jansen C, Keller CA, Wixom AQ, Cockburn A, Miller A, Qi Q, He Y, Li Y, Lichtenberg J, Heuston EF, Anderson SM, Luan J, Vermunt MW, Yue F, Sauria MEG, Schatz MC, Taylor J, Gottgens B, Hughes JR, Higgs DR, Weiss MJ, Cheng Y, Blobel GA, Bodine DM, Zhang Y, Li Q, Mahony S, Hardison RC. Xiang G, et al. Among authors: giardine bm. bioRxiv [Preprint]. 2024 May 17:2023.04.02.535219. doi: 10.1101/2023.04.02.535219. bioRxiv. 2024. Update in: Genome Res. 2024 Aug 20;34(7):1089-1105. doi: 10.1101/gr.277950.123 PMID: 37066352 Free PMC article. Updated. Preprint.
Gene silencing dynamics are modulated by transiently active regulatory elements.
Vermunt MW, Luan J, Zhang Z, Thrasher AJ, Huang A, Saari MS, Khandros E, Beagrie RA, Zhang S, Vemulamada P, Brilleman M, Lee K, Yano JA, Giardine BM, Keller CA, Hardison RC, Blobel GA. Vermunt MW, et al. Among authors: giardine bm. Mol Cell. 2023 Mar 2;83(5):715-730.e6. doi: 10.1016/j.molcel.2023.02.006. Mol Cell. 2023. PMID: 36868189 Free PMC article.
CTCF blocks antisense transcription initiation at divergent promoters.
Luan J, Vermunt MW, Syrett CM, Coté A, Tome JM, Zhang H, Huang A, Luppino JM, Keller CA, Giardine BM, Zhang S, Dunagin MC, Zhang Z, Joyce EF, Lis JT, Raj A, Hardison RC, Blobel GA. Luan J, et al. Among authors: giardine bm. Nat Struct Mol Biol. 2022 Nov;29(11):1136-1144. doi: 10.1038/s41594-022-00855-y. Epub 2022 Nov 11. Nat Struct Mol Biol. 2022. PMID: 36369346 Free PMC article.
Identification and characterization of RBM12 as a novel regulator of fetal hemoglobin expression.
Wakabayashi A, Kihiu M, Sharma M, Thrasher AJ, Saari MS, Quesnel-Vallières M, Abdulmalik O, Peslak SA, Khandros E, Keller CA, Giardine BM, Barash Y, Hardison RC, Shi J, Blobel GA. Wakabayashi A, et al. Among authors: giardine bm. Blood Adv. 2022 Dec 13;6(23):5956-5968. doi: 10.1182/bloodadvances.2022007904. Blood Adv. 2022. PMID: 35622975 Free PMC article.
Author Correction: Perspectives on ENCODE.
ENCODE Project Consortium; Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Nature. 2022 May;605(7909):E4. doi: 10.1038/s41586-021-04213-8. Nature. 2022. PMID: 35474002 Free PMC article. No abstract available.
27 results