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MedShapeNet - a large-scale dataset of 3D medical shapes for computer vision.
Li J, Zhou Z, Yang J, Pepe A, Gsaxner C, Luijten G, Qu C, Zhang T, Chen X, Li W, Wodzinski M, Friedrich P, Xie K, Jin Y, Ambigapathy N, Nasca E, Solak N, Melito GM, Vu VD, Memon AR, Schlachta C, De Ribaupierre S, Patel R, Eagleson R, Chen X, Mächler H, Kirschke JS, de la Rosa E, Christ PF, Li HB, Ellis DG, Aizenberg MR, Gatidis S, Küstner T, Shusharina N, Heller N, Andrearczyk V, Depeursinge A, Hatt M, Sekuboyina A, Löffler MT, Liebl H, Dorent R, Vercauteren T, Shapey J, Kujawa A, Cornelissen S, Langenhuizen P, Ben-Hamadou A, Rekik A, Pujades S, Boyer E, Bolelli F, Grana C, Lumetti L, Salehi H, Ma J, Zhang Y, Gharleghi R, Beier S, Sowmya A, Garza-Villarreal EA, Balducci T, Angeles-Valdez D, Souza R, Rittner L, Frayne R, Ji Y, Ferrari V, Chatterjee S, Dubost F, Schreiber S, Mattern H, Speck O, Haehn D, John C, Nürnberger A, Pedrosa J, Ferreira C, Aresta G, Cunha A, Campilho A, Suter Y, Garcia J, Lalande A, Vandenbossche V, Van Oevelen A, Duquesne K, Mekhzoum H, Vandemeulebroucke J, Audenaert E, Krebs C, van Leeuwen T, Vereecke E, Heidemeyer H, Röhrig R, Hölzle F, Badeli V, Krieger K, Gunzer M, Chen J, van Meegdenburg T, Dada A, Balzer M, Fragemann J, Jonske F, Rempe M… See abstract for full author list ➔ Li J, et al. Among authors: zhang t, zhang y. Biomed Tech (Berl). 2024 Dec 30. doi: 10.1515/bmt-2024-0396. Online ahead of print. Biomed Tech (Berl). 2024. PMID: 39733351
The multimodality cell segmentation challenge: toward universal solutions.
Ma J, Xie R, Ayyadhury S, Ge C, Gupta A, Gupta R, Gu S, Zhang Y, Lee G, Kim J, Lou W, Li H, Upschulte E, Dickscheid T, de Almeida JG, Wang Y, Han L, Yang X, Labagnara M, Gligorovski V, Scheder M, Rahi SJ, Kempster C, Pollitt A, Espinosa L, Mignot T, Middeke JM, Eckardt JN, Li W, Li Z, Cai X, Bai B, Greenwald NF, Van Valen D, Weisbart E, Cimini BA, Cheung T, Brück O, Bader GD, Wang B. Ma J, et al. Among authors: zhang y. Nat Methods. 2024 Jun;21(6):1103-1113. doi: 10.1038/s41592-024-02233-6. Epub 2024 Mar 26. Nat Methods. 2024. PMID: 38532015 Free PMC article.
AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem?
Ma J, Zhang Y, Gu S, Zhu C, Ge C, Zhang Y, An X, Wang C, Wang Q, Liu X, Cao S, Zhang Q, Liu S, Wang Y, Li Y, He J, Yang X. Ma J, et al. Among authors: zhang q, zhang y. IEEE Trans Pattern Anal Mach Intell. 2022 Oct;44(10):6695-6714. doi: 10.1109/TPAMI.2021.3100536. Epub 2022 Sep 14. IEEE Trans Pattern Anal Mach Intell. 2022. PMID: 34314356
Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge.
Campello VM, Gkontra P, Izquierdo C, Martin-Isla C, Sojoudi A, Full PM, Maier-Hein K, Zhang Y, He Z, Ma J, Parreno M, Albiol A, Kong F, Shadden SC, Acero JC, Sundaresan V, Saber M, Elattar M, Li H, Menze B, Khader F, Haarburger C, Scannell CM, Veta M, Carscadden A, Punithakumar K, Liu X, Tsaftaris SA, Huang X, Yang X, Li L, Zhuang X, Vilades D, Descalzo ML, Guala A, Mura L, Friedrich MG, Garg R, Lebel J, Henriques F, Karakas M, Cavus E, Petersen SE, Escalera S, Segui S, Rodriguez-Palomares JF, Lekadir K. Campello VM, et al. Among authors: zhang y. IEEE Trans Med Imaging. 2021 Dec;40(12):3543-3554. doi: 10.1109/TMI.2021.3090082. Epub 2021 Nov 30. IEEE Trans Med Imaging. 2021. PMID: 34138702 Free article.
Unleashing the strengths of unlabelled data in deep learning-assisted pan-cancer abdominal organ quantification: the FLARE22 challenge.
Ma J, Zhang Y, Gu S, Ge C, Mae S, Young A, Zhu C, Yang X, Meng K, Huang Z, Zhang F, Pan Y, Huang S, Wang J, Sun M, Zhang R, Jia D, Choi JW, Alves N, de Wilde B, Koehler G, Lai H, Wang E, Wiesenfarth M, Zhu Q, Dong G, He J; FLARE Challenge Consortium; Wang B. Ma J, et al. Among authors: zhang r, zhang f, zhang y. Lancet Digit Health. 2024 Nov;6(11):e815-e826. doi: 10.1016/S2589-7500(24)00154-7. Lancet Digit Health. 2024. PMID: 39455194 Free article. Review.
PRIMARY CUTANEOUS CD8+ AGGRESSIVE EPIDERMOTROPIC CYTOTOXIC T-CELL LYMPHOMA WITH NOVEL FGFR1 FUSION TREATED WITH PEMIGATINIB.
Torres-Cabala CA, Yescas J, Zhang Y, Huen A, Gaur S, Tefft K, Tang G, Curry JL, Gunther JR, Dabaja BS, Iyer SP, Miranda RN, Choi J, Nardi V. Torres-Cabala CA, et al. Among authors: zhang y. Blood Adv. 2025 Jan 18:bloodadvances.2024014928. doi: 10.1182/bloodadvances.2024014928. Online ahead of print. Blood Adv. 2025. PMID: 39825823 No abstract available.
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