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MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.
Cahn J, Regulski M, Lynn J, Ernst E, de Santis Alves C, Ramakrishnan S, Chougule K, Wei S, Lu Z, Xu X, Ramu U, Drenkow J, Kramer M, Seetharam A, Hufford MB, McCombie WR, Ware D, Jackson D, Schatz MC, Gingeras TR, Martienssen RA. Cahn J, et al. Among authors: xu x. Nat Commun. 2024 Dec 30;15(1):10854. doi: 10.1038/s41467-024-55195-w. Nat Commun. 2024. PMID: 39738013 Free PMC article.
Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.
Wang L, Lu Z, delaBastide M, Van Buren P, Wang X, Ghiban C, Regulski M, Drenkow J, Xu X, Ortiz-Ramirez C, Marco CF, Goodwin S, Dobin A, Birnbaum KD, Jackson DP, Martienssen RA, McCombie WR, Micklos DA, Schatz MC, Ware DH, Gingeras TR. Wang L, et al. Among authors: xu x. Front Plant Sci. 2020 Mar 31;11:289. doi: 10.3389/fpls.2020.00289. eCollection 2020. Front Plant Sci. 2020. PMID: 32296450 Free PMC article.
Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.
Xu X, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu Z, Wang L, Fox N, Wang X, Drenkow J, Luo A, Char SN, Yang B, Sylvester AW, Gingeras TR, Schmitz RJ, Ware D, Lipka AE, Gillis J, Jackson D. Xu X, et al. Dev Cell. 2021 Feb 22;56(4):557-568.e6. doi: 10.1016/j.devcel.2020.12.015. Epub 2021 Jan 4. Dev Cell. 2021. PMID: 33400914 Free PMC article.
A pan-grass transcriptome reveals patterns of cellular divergence in crops.
Guillotin B, Rahni R, Passalacqua M, Mohammed MA, Xu X, Raju SK, Ramírez CO, Jackson D, Groen SC, Gillis J, Birnbaum KD. Guillotin B, et al. Among authors: xu x. Nature. 2023 May;617(7962):785-791. doi: 10.1038/s41586-023-06053-0. Epub 2023 May 10. Nature. 2023. PMID: 37165193 Free PMC article.
An Efficient Cell Sorting Protocol for Maize Protoplasts.
Ortiz-Ramírez C, Arevalo ED, Xu X, Jackson DP, Birnbaum KD. Ortiz-Ramírez C, et al. Among authors: xu x. Curr Protoc Plant Biol. 2018 Sep;3(3):e20072. doi: 10.1002/cppb.20072. Epub 2018 Aug 23. Curr Protoc Plant Biol. 2018. PMID: 30138552 Free PMC article.
Ground tissue circuitry regulates organ complexity in maize and Setaria.
Ortiz-Ramírez C, Guillotin B, Xu X, Rahni R, Zhang S, Yan Z, Coqueiro Dias Araujo P, Demesa-Arevalo E, Lee L, Van Eck J, Gingeras TR, Jackson D, Gallagher KL, Birnbaum KD. Ortiz-Ramírez C, et al. Among authors: xu x. Science. 2021 Dec 3;374(6572):1247-1252. doi: 10.1126/science.abj2327. Epub 2021 Dec 2. Science. 2021. PMID: 34855479 Free PMC article.
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