Hacisuleyman A - Search Results

1

Role of Mutual Information Profile Shifts in Assessing the Pathogenicity of Mutations on Protein Functions: The Case of Pyrin Variants Associated With Familial Mediterranean Fever.

Hacisuleyman A, Gul A, Erman B. Hacisuleyman A, et al. Proteins. 2024 Dec 31. doi: 10.1002/prot.26795. Online ahead of print. Proteins. 2024. PMID: 39739522

2

A look beyond the QR code of SNARE proteins.

Yadav D, Hacisuleyman A, Dergai M, Khalifeh D, Abriata LA, Peraro MD, Fasshauer D. Yadav D, et al. Among authors: hacisuleyman a. Protein Sci. 2024 Sep;33(9):e5158. doi: 10.1002/pro.5158. Protein Sci. 2024. PMID: 39180485 Free PMC article.

3

Synergy and anti-cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS-RGL1.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. Proteins. 2024 May;92(5):665-678. doi: 10.1002/prot.26657. Epub 2023 Dec 28. Proteins. 2024. PMID: 38153169

4

Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody-protein complexes.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. Proteins. 2023 Oct;91(10):1417-1426. doi: 10.1002/prot.26529. Epub 2023 May 26. Proteins. 2023. PMID: 37232507

5

Prediction of allosteric communication pathways in proteins.

Haliloglu T, Hacisuleyman A, Erman B. Haliloglu T, et al. Among authors: hacisuleyman a. Bioinformatics. 2022 Jul 11;38(14):3590-3599. doi: 10.1093/bioinformatics/btac380. Bioinformatics. 2022. PMID: 35674396

6

Information flow and allosteric communication in proteins.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. J Chem Phys. 2022 May 14;156(18):185101. doi: 10.1063/5.0088522. J Chem Phys. 2022. PMID: 35568552

7

SARS-CoV-2 Delta Variant Decreases Nanobody Binding and ACE2 Blocking Effectivity.

Golcuk M, Hacisuleyman A, Yilmaz SZ, Taka E, Yildiz A, Gur M. Golcuk M, et al. Among authors: hacisuleyman a. J Chem Inf Model. 2022 May 23;62(10):2490-2498. doi: 10.1021/acs.jcim.1c01523. Epub 2022 May 9. J Chem Inf Model. 2022. PMID: 35533364 Free PMC article.

8

Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein.

Golcuk M, Hacisuleyman A, Erman B, Yildiz A, Gur M. Golcuk M, et al. Among authors: hacisuleyman a. J Chem Inf Model. 2021 Oct 25;61(10):5152-5160. doi: 10.1021/acs.jcim.1c00695. Epub 2021 Sep 28. J Chem Inf Model. 2021. PMID: 34581563

9

Synchronous and Asynchronous Response in Dynamically Perturbed Proteins.

Hacisuleyman A, Erkip A, Erman B, Erman B. Hacisuleyman A, et al. J Phys Chem B. 2021 Jan 28;125(3):729-739. doi: 10.1021/acs.jpcb.0c08409. Epub 2021 Jan 19. J Phys Chem B. 2021. PMID: 33464898

10

ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity.

Hacisuleyman A, Erman B. Hacisuleyman A, et al. J Biol Phys. 2020 Jun;46(2):189-208. doi: 10.1007/s10867-020-09548-3. Epub 2020 May 16. J Biol Phys. 2020. PMID: 32418062 Free PMC article.

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