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Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M, Zhang L, Liu J, Hou X, Han X, Lu Z, Ma X, Zhovmer A, Combs C, Moyle M, Yemini E, Liu H, Liu Z, Benedetto A, La Riviere P, Colón-Ramos D, Shroff H. Guo M, et al. Among authors: colon ramos d. Nat Commun. 2025 Jan 2;16(1):313. doi: 10.1038/s41467-024-55267-x. Nat Commun. 2025. PMID: 39747824 Free PMC article.
Rapid image deconvolution and multiview fusion for optical microscopy.
Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, Prince V, Waters JC, Annunziata CM, Hafner M, Mohler WA, Chitnis AB, Upadhyaya A, Usdin TB, Bao Z, Colón-Ramos D, La Riviere P, Liu H, Wu Y, Shroff H. Guo M, et al. Nat Biotechnol. 2020 Nov;38(11):1337-1346. doi: 10.1038/s41587-020-0560-x. Epub 2020 Jun 29. Nat Biotechnol. 2020. PMID: 32601431 Free PMC article.
Multiview confocal super-resolution microscopy.
Wu Y, Han X, Su Y, Glidewell M, Daniels JS, Liu J, Sengupta T, Rey-Suarez I, Fischer R, Patel A, Combs C, Sun J, Wu X, Christensen R, Smith C, Bao L, Sun Y, Duncan LH, Chen J, Pommier Y, Shi YB, Murphy E, Roy S, Upadhyaya A, Colón-Ramos D, La Riviere P, Shroff H. Wu Y, et al. Nature. 2021 Dec;600(7888):279-284. doi: 10.1038/s41586-021-04110-0. Epub 2021 Nov 26. Nature. 2021. PMID: 34837071 Free PMC article.
Incorporating the image formation process into deep learning improves network performance.
Li Y, Su Y, Guo M, Han X, Liu J, Vishwasrao HD, Li X, Christensen R, Sengupta T, Moyle MW, Rey-Suarez I, Chen J, Upadhyaya A, Usdin TB, Colón-Ramos DA, Liu H, Wu Y, Shroff H. Li Y, et al. Nat Methods. 2022 Nov;19(11):1427-1437. doi: 10.1038/s41592-022-01652-7. Epub 2022 Oct 31. Nat Methods. 2022. PMID: 36316563 Free PMC article.
Advanced optical imaging techniques for neurodevelopment.
Wu Y, Christensen R, Colón-Ramos D, Shroff H. Wu Y, et al. Curr Opin Neurobiol. 2013 Dec;23(6):1090-7. doi: 10.1016/j.conb.2013.06.008. Epub 2013 Jul 5. Curr Opin Neurobiol. 2013. PMID: 23831260 Free PMC article. Review.
Visualizing Calcium Flux in Freely Moving Nematode Embryos.
Ardiel EL, Kumar A, Marbach J, Christensen R, Gupta R, Duncan W, Daniels JS, Stuurman N, Colón-Ramos D, Shroff H. Ardiel EL, et al. Biophys J. 2017 May 9;112(9):1975-1983. doi: 10.1016/j.bpj.2017.02.035. Biophys J. 2017. PMID: 28494967 Free PMC article.
73 results