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Movi: A fast and cache-efficient full-text pangenome index.
Zakeri M, Brown NK, Ahmed OY, Gagie T, Langmead B. Zakeri M, et al. Among authors: ahmed oy. iScience. 2024 Nov 27;27(12):111464. doi: 10.1016/j.isci.2024.111464. eCollection 2024 Dec 20. iScience. 2024. PMID: 39758981 Free PMC article.
Pan-genomic matching statistics for targeted nanopore sequencing.
Ahmed O, Rossi M, Kovaka S, Schatz MC, Gagie T, Boucher C, Langmead B. Ahmed O, et al. iScience. 2021 Jun 8;24(6):102696. doi: 10.1016/j.isci.2021.102696. eCollection 2021 Jun 25. iScience. 2021. PMID: 34195571 Free PMC article.
Efficient taxa identification using a pangenome index.
Ahmed O, Rossi M, Boucher C, Langmead B. Ahmed O, et al. Genome Res. 2023 Jul;33(7):1069-1077. doi: 10.1101/gr.277642.123. Epub 2023 May 31. Genome Res. 2023. PMID: 37258301 Free PMC article.
DandD: Efficient measurement of sequence growth and similarity.
Bonnie JK, Ahmed OY, Langmead B. Bonnie JK, et al. Among authors: ahmed oy. iScience. 2024 Feb 1;27(3):109054. doi: 10.1016/j.isci.2024.109054. eCollection 2024 Mar 15. iScience. 2024. PMID: 38361606 Free PMC article.
MEM-based pangenome indexing for k-mer queries.
Hwang S, Brown NK, Ahmed OY, Jenike KM, Kovaka S, Schatz MC, Langmead B. Hwang S, et al. Among authors: ahmed oy. bioRxiv [Preprint]. 2024 May 22:2024.05.20.595044. doi: 10.1101/2024.05.20.595044. bioRxiv. 2024. PMID: 38826299 Free PMC article. Preprint.
19 results