Xu J - Search Results

1

CDPMF-DDA: contrastive deep probabilistic matrix factorization for drug-disease association prediction.

Tang X, Hou Y, Meng Y, Wang Z, Lu C, Lv J, Hu X, Xu J, Yang J. Tang X, et al. Among authors: xu j. BMC Bioinformatics. 2025 Jan 7;26(1):5. doi: 10.1186/s12859-024-06032-w. BMC Bioinformatics. 2025. PMID: 39773275 Free PMC article.

2

BPLLDA: Predicting lncRNA-Disease Associations Based on Simple Paths With Limited Lengths in a Heterogeneous Network.

Xiao X, Zhu W, Liao B, Xu J, Gu C, Ji B, Yao Y, Peng L, Yang J. Xiao X, et al. Among authors: xu j. Front Genet. 2018 Oct 16;9:411. doi: 10.3389/fgene.2018.00411. eCollection 2018. Front Genet. 2018. PMID: 30459803 Free PMC article.

3

Inferring Latent Disease-lncRNA Associations by Faster Matrix Completion on a Heterogeneous Network.

Li W, Wang S, Xu J, Mao G, Tian G, Yang J. Li W, et al. Among authors: xu j. Front Genet. 2019 Sep 4;10:769. doi: 10.3389/fgene.2019.00769. eCollection 2019. Front Genet. 2019. PMID: 31572428 Free PMC article.

4

Identifying Potential miRNAs-Disease Associations With Probability Matrix Factorization.

Xu J, Cai L, Liao B, Zhu W, Wang P, Meng Y, Lang J, Tian G, Yang J. Xu J, et al. Front Genet. 2019 Dec 11;10:1234. doi: 10.3389/fgene.2019.01234. eCollection 2019. Front Genet. 2019. PMID: 31921290 Free PMC article.

5

CMF-Impute: an accurate imputation tool for single-cell RNA-seq data.

Xu J, Cai L, Liao B, Zhu W, Yang J. Xu J, et al. Bioinformatics. 2020 May 1;36(10):3139-3147. doi: 10.1093/bioinformatics/btaa109. Bioinformatics. 2020. PMID: 32073612

6

Single-cell RNA-seq clustering: datasets, models, and algorithms.

Peng L, Tian X, Tian G, Xu J, Huang X, Weng Y, Yang J, Zhou L. Peng L, et al. Among authors: xu j. RNA Biol. 2020 Jun;17(6):765-783. doi: 10.1080/15476286.2020.1728961. Epub 2020 Mar 1. RNA Biol. 2020. PMID: 32116127 Free PMC article.

7

Drug repositioning based on similarity constrained probabilistic matrix factorization: COVID-19 as a case study.

Meng Y, Jin M, Tang X, Xu J. Meng Y, et al. Among authors: xu j. Appl Soft Comput. 2021 May;103:107135. doi: 10.1016/j.asoc.2021.107135. Epub 2021 Jan 23. Appl Soft Comput. 2021. PMID: 33519322 Free PMC article.

8

Indicator Regularized Non-Negative Matrix Factorization Method-Based Drug Repurposing for COVID-19.

Tang X, Cai L, Meng Y, Xu J, Lu C, Yang J. Tang X, et al. Among authors: xu j. Front Immunol. 2021 Jan 29;11:603615. doi: 10.3389/fimmu.2020.603615. eCollection 2020. Front Immunol. 2021. PMID: 33584672 Free PMC article.

9

Prioritizing antiviral drugs against SARS-CoV-2 by integrating viral complete genome sequences and drug chemical structures.

Peng L, Shen L, Xu J, Tian X, Liu F, Wang J, Tian G, Yang J, Zhou L. Peng L, et al. Among authors: xu j. Sci Rep. 2021 Mar 18;11(1):6248. doi: 10.1038/s41598-021-83737-5. Sci Rep. 2021. PMID: 33737523 Free PMC article.

10

Drug repositioning based on the heterogeneous information fusion graph convolutional network.

Cai L, Lu C, Xu J, Meng Y, Wang P, Fu X, Zeng X, Su Y. Cai L, et al. Among authors: xu j. Brief Bioinform. 2021 Nov 5;22(6):bbab319. doi: 10.1093/bib/bbab319. Brief Bioinform. 2021. PMID: 34378011

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