Tanizawa Y - Search Results

1

DFAST_QC: quality assessment and taxonomic identification tool for prokaryotic Genomes.

Elmanzalawi M, Fujisawa T, Mori H, Nakamura Y, Tanizawa Y. Elmanzalawi M, et al. Among authors: tanizawa y. BMC Bioinformatics. 2025 Jan 7;26(1):3. doi: 10.1186/s12859-024-06030-y. BMC Bioinformatics. 2025. PMID: 39773409 Free PMC article.

2

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.

Tanizawa Y, Fujisawa T, Nakamura Y. Tanizawa Y, et al. Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713. Bioinformatics. 2018. PMID: 29106469 Free PMC article.

3

Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.

Tanizawa Y, Fujisawa T, Arita M, Nakamura Y. Tanizawa Y, et al. Methods Mol Biol. 2019;1962:215-226. doi: 10.1007/978-1-4939-9173-0_13. Methods Mol Biol. 2019. PMID: 31020563

4

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.

Kaminuma E, Fujisawa T, Tanizawa Y, Sakamoto N, Kurata N, Shimizu T, Nakamura Y. Kaminuma E, et al. Among authors: tanizawa y. Nucleic Acids Res. 2013 Jan;41(Database issue):D880-4. doi: 10.1093/nar/gks1216. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193255 Free PMC article.

5

DFAST and DAGA: web-based integrated genome annotation tools and resources.

Tanizawa Y, Fujisawa T, Kaminuma E, Nakamura Y, Arita M. Tanizawa Y, et al. Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14. Biosci Microbiota Food Health. 2016. PMID: 27867804 Free PMC article.

6

DNA Data Bank of Japan (DDBJ) update report 2022.

Tanizawa Y, Fujisawa T, Kodama Y, Kosuge T, Mashima J, Tanjo T, Nakamura Y. Tanizawa Y, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D101-D105. doi: 10.1093/nar/gkac1083. Nucleic Acids Res. 2023. PMID: 36420889 Free PMC article.

7

DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata.

Ara T, Kodama Y, Tokimatsu T, Fukuda A, Kosuge T, Mashima J, Tanizawa Y, Tanjo T, Ogasawara O, Fujisawa T, Nakamura Y, Arita M. Ara T, et al. Among authors: tanizawa y. Nucleic Acids Res. 2024 Jan 5;52(D1):D67-D71. doi: 10.1093/nar/gkad1046. Nucleic Acids Res. 2024. PMID: 37971299 Free PMC article.

8

DNApod: DNA polymorphism annotation database from next-generation sequence read archives.

Mochizuki T, Tanizawa Y, Fujisawa T, Ohta T, Nikoh N, Shimizu T, Toyoda A, Fujiyama A, Kurata N, Nagasaki H, Kaminuma E, Nakamura Y. Mochizuki T, et al. Among authors: tanizawa y. PLoS One. 2017 Feb 24;12(2):e0172269. doi: 10.1371/journal.pone.0172269. eCollection 2017. PLoS One. 2017. PMID: 28234924 Free PMC article.

9

A practical assembly guideline for genomes with various levels of heterozygosity.

Mochizuki T, Sakamoto M, Tanizawa Y, Nakayama T, Tanifuji G, Kamikawa R, Nakamura Y. Mochizuki T, et al. Among authors: tanizawa y. Brief Bioinform. 2023 Sep 22;24(6):bbad337. doi: 10.1093/bib/bbad337. Brief Bioinform. 2023. PMID: 37798248 Free PMC article.

10

Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains.

Tanizawa Y, Fujisawa T, Mochizuki T, Kaminuma E, Suzuki Y, Nakamura Y, Tohno M. Tanizawa Y, et al. Genome Announc. 2014 Jul 10;2(4):e00667-14. doi: 10.1128/genomeA.00667-14. Genome Announc. 2014. PMID: 25013139 Free PMC article.

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