Zhang X - Search Results

1

SEE: A Method for Predicting the Dynamics of Chromatin Conformation Based on Single-Cell Gene Expression.

Li M, Yang Y, Wu R, Gong H, Yuan Z, Wang J, Long E, Zhang X, Chen Y. Li M, et al. Among authors: zhang x. Adv Sci (Weinh). 2025 Jan 7:e2406413. doi: 10.1002/advs.202406413. Online ahead of print. Adv Sci (Weinh). 2025. PMID: 39778075

2

Application of Hi-C and other omics data analysis in human cancer and cell differentiation research.

Gong H, Yang Y, Zhang S, Li M, Zhang X. Gong H, et al. Among authors: zhang s, zhang x. Comput Struct Biotechnol J. 2021 Apr 8;19:2070-2083. doi: 10.1016/j.csbj.2021.04.016. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 33995903 Free PMC article. Review.

3

CASPIAN: A method to identify chromatin topological associated domains based on spatial density cluster.

Gong H, Yang Y, Zhang X, Li M, Zhang S, Chen Y. Gong H, et al. Among authors: zhang s, zhang x. Comput Struct Biotechnol J. 2022 Sep 5;20:4816-4824. doi: 10.1016/j.csbj.2022.08.059. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36147659 Free PMC article.

4

MINE is a method for detecting spatial density of regulatory chromatin interactions based on a multi-modal network.

Gong H, Li M, Ji M, Zhang X, Yuan Z, Zhang S, Yang Y, Li C, Chen Y. Gong H, et al. Among authors: zhang s, zhang x. Cell Rep Methods. 2023 Jan 12;3(1):100386. doi: 10.1016/j.crmeth.2022.100386. eCollection 2023 Jan 23. Cell Rep Methods. 2023. PMID: 36814847 Free PMC article.

5

Calculating the spatial density of regulatory chromatin interactions using multi-modal datasets from the same cell line.

Gong H, Li M, Ji M, Zhang X, Yuan Z, Zhang S, Yang Y, Li C, Chen Y. Gong H, et al. Among authors: zhang s, zhang x. STAR Protoc. 2023 Mar 30;4(2):102188. doi: 10.1016/j.xpro.2023.102188. Online ahead of print. STAR Protoc. 2023. PMID: 37000618 Free PMC article.

6

TOAST: A novel method for identifying topologically associated domains based on graph auto-encoders and clustering.

Gong H, Zhang D, Zhang X. Gong H, et al. Among authors: zhang d, zhang x. Comput Struct Biotechnol J. 2023 Sep 27;21:4759-4768. doi: 10.1016/j.csbj.2023.09.019. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 37822562 Free PMC article.

7

[Advances in methods and applications of single-cell Hi-C data analysis].

Gong H, Ma F, Zhang X. Gong H, et al. Among authors: zhang x. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2023 Oct 25;40(5):1033-1039. doi: 10.7507/1001-5515.202303046. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2023. PMID: 37879935 Free PMC article. Chinese.

8

A method for chromatin domain partitioning based on hypergraph clustering.

Gong H, Zhang S, Zhang X, Chen Y. Gong H, et al. Among authors: zhang s, zhang x. Comput Struct Biotechnol J. 2024 Apr 16;23:1584-1593. doi: 10.1016/j.csbj.2024.04.008. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38655013 Free PMC article.

9

[An identification method of chromatin topological associated domains based on spatial density clustering].

Gong H, Zhang S, Zhang X. Gong H, et al. Among authors: zhang s, zhang x. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2024 Jun 25;41(3):552-559. doi: 10.7507/1001-5515.202311059. Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2024. PMID: 38932542 Free PMC article. Chinese.

10

A 3-D Chromosome Structure Reconstruction Method With High Resolution Hi-C Data Using Nonlinear Dimensionality Reduction and Divide-and-Conquer Strategy.

Gong H, Ma F, Zhang X, Yang Y, Li M, Chen Z, Zhang S, Chen Y. Gong H, et al. Among authors: zhang s, zhang x. IEEE Trans Nanobioscience. 2023 Oct;22(4):716-727. doi: 10.1109/TNB.2023.3277440. Epub 2023 Oct 3. IEEE Trans Nanobioscience. 2023. PMID: 37200118

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