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Bayesian Gene Set Benchmark Dose Estimation for "omic" responses.
Zilber D, Messier KP, House J, Parham F, Auerbach SS, Wheeler MW. Zilber D, et al. Among authors: parham f. Bioinformatics. 2025 Jan 9:btaf008. doi: 10.1093/bioinformatics/btaf008. Online ahead of print. Bioinformatics. 2025. PMID: 39786864
Unlocking the Potential of Clustering and Classification Approaches: Navigating Supervised and Unsupervised Chemical Similarity.
Mansouri K, Taylor K, Auerbach S, Ferguson S, Frawley R, Hsieh JH, Jahnke G, Kleinstreuer N, Mehta S, Moreira-Filho JT, Parham F, Rider C, Rooney AA, Wang A, Sutherland V. Mansouri K, et al. Among authors: parham f. Environ Health Perspect. 2024 Aug;132(8):85002. doi: 10.1289/EHP14001. Epub 2024 Aug 6. Environ Health Perspect. 2024. PMID: 39106156 Free PMC article.
Evaluation of 5-day In Vivo Rat Liver and Kidney With High-throughput Transcriptomics for Estimating Benchmark Doses of Apical Outcomes.
Gwinn WM, Auerbach SS, Parham F, Stout MD, Waidyanatha S, Mutlu E, Collins B, Paules RS, Merrick BA, Ferguson S, Ramaiahgari S, Bucher JR, Sparrow B, Toy H, Gorospe J, Machesky N, Shah RR, Balik-Meisner MR, Mav D, Phadke DP, Roberts G, DeVito MJ. Gwinn WM, et al. Among authors: parham f. Toxicol Sci. 2020 Aug 1;176(2):343-354. doi: 10.1093/toxsci/kfaa081. Toxicol Sci. 2020. PMID: 32492150 Free PMC article.
A scoping review of the health and toxicological activity of bisphenol A (BPA) structural analogues and functional alternatives.
Pelch K, Wignall JA, Goldstone AE, Ross PK, Blain RB, Shapiro AJ, Holmgren SD, Hsieh JH, Svoboda D, Auerbach SS, Parham FM, Masten SA, Walker V, Rooney A, Thayer KA. Pelch K, et al. Among authors: parham fm. Toxicology. 2019 Aug 1;424:152235. doi: 10.1016/j.tox.2019.06.006. Epub 2019 Jun 12. Toxicology. 2019. PMID: 31201879 Free article. Review.
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow.
Phillips JR, Svoboda DL, Tandon A, Patel S, Sedykh A, Mav D, Kuo B, Yauk CL, Yang L, Thomas RS, Gift JS, Davis JA, Olszyk L, Merrick BA, Paules RS, Parham F, Saddler T, Shah RR, Auerbach SS. Phillips JR, et al. Among authors: parham f. Bioinformatics. 2019 May 15;35(10):1780-1782. doi: 10.1093/bioinformatics/bty878. Bioinformatics. 2019. PMID: 30329029 Free PMC article.
39 results