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The NeuroML ecosystem for standardized multi-scale modeling in neuroscience.
Sinha A, Gleeson P, Marin B, Dura-Bernal S, Panagiotou S, Crook S, Cantarelli M, Cannon RC, Davison AP, Gurnani H, Silver RA. Sinha A, et al. Among authors: davison ap. Elife. 2025 Jan 10;13:RP95135. doi: 10.7554/eLife.95135. Elife. 2025. PMID: 39792574 Free PMC article.
A comprehensive data-driven model of cat primary visual cortex.
Antolík J, Cagnol R, Rózsa T, Monier C, Frégnac Y, Davison AP. Antolík J, et al. Among authors: davison ap. PLoS Comput Biol. 2024 Aug 21;20(8):e1012342. doi: 10.1371/journal.pcbi.1012342. eCollection 2024 Aug. PLoS Comput Biol. 2024. PMID: 39167628 Free PMC article.
A faster way to model neuronal circuitry.
Davison AP, Appukuttan S. Davison AP, et al. Elife. 2022 Dec 2;11:e84463. doi: 10.7554/eLife.84463. Elife. 2022. PMID: 36458813 Free PMC article.
HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data.
Sáray S, Rössert CA, Appukuttan S, Migliore R, Vitale P, Lupascu CA, Bologna LL, Van Geit W, Romani A, Davison AP, Muller E, Freund TF, Káli S. Sáray S, et al. Among authors: davison ap. PLoS Comput Biol. 2021 Jan 29;17(1):e1008114. doi: 10.1371/journal.pcbi.1008114. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33513130 Free PMC article.
Editorial: Reproducibility and Rigour in Computational Neuroscience.
Crook SM, Davison AP, McDougal RA, Plesser HE. Crook SM, et al. Among authors: davison ap. Front Neuroinform. 2020 May 27;14:23. doi: 10.3389/fninf.2020.00023. eCollection 2020. Front Neuroinform. 2020. PMID: 32536859 Free PMC article. No abstract available.
The SONATA data format for efficient description of large-scale network models.
Dai K, Hernando J, Billeh YN, Gratiy SL, Planas J, Davison AP, Dura-Bernal S, Gleeson P, Devresse A, Dichter BK, Gevaert M, King JG, Van Geit WAH, Povolotsky AV, Muller E, Courcol JD, Arkhipov A. Dai K, et al. Among authors: davison ap. PLoS Comput Biol. 2020 Feb 24;16(2):e1007696. doi: 10.1371/journal.pcbi.1007696. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32092054 Free PMC article.
Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits.
Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, Idili G, Lanore F, Larson SD, Lytton WW, Majumdar A, McDougal RA, Sivagnanam S, Solinas S, Stanislovas R, van Albada SJ, van Geit W, Silver RA. Gleeson P, et al. Among authors: davison ap. Neuron. 2019 Aug 7;103(3):395-411.e5. doi: 10.1016/j.neuron.2019.05.019. Epub 2019 Jun 11. Neuron. 2019. PMID: 31201122 Free PMC article.
36 results