Sjölander K - Search Results

1

Hidden Markov models in computational biology. Applications to protein modeling.

Krogh A, Brown M, Mian IS, Sjölander K, Haussler D. Krogh A, et al. Among authors: sjolander k. J Mol Biol. 1994 Feb 4;235(5):1501-31. doi: 10.1006/jmbi.1994.1104. J Mol Biol. 1994. PMID: 8107089

2

Using Dirichlet mixture priors to derive hidden Markov models for protein families.

Brown M, Hughey R, Krogh A, Mian IS, Sjölander K, Haussler D. Brown M, et al. Among authors: sjolander k. Proc Int Conf Intell Syst Mol Biol. 1993;1:47-55. Proc Int Conf Intell Syst Mol Biol. 1993. PMID: 7584370

3

Stochastic context-free grammars for tRNA modeling.

Sakakibara Y, Brown M, Hughey R, Mian IS, Sjölander K, Underwood RC, Haussler D. Sakakibara Y, et al. Among authors: sjolander k. Nucleic Acids Res. 1994 Nov 25;22(23):5112-20. doi: 10.1093/nar/22.23.5112. Nucleic Acids Res. 1994. PMID: 7800507 Free PMC article.

4

Predicting protein structure using hidden Markov models.

Karplus K, Sjölander K, Barrett C, Cline M, Haussler D, Hughey R, Holm L, Sander C. Karplus K, et al. Among authors: sjolander k. Proteins. 1997;Suppl 1:134-9. doi: 10.1002/(sici)1097-0134(1997)1+<134::aid-prot18>3.3.co;2-q. Proteins. 1997. PMID: 9485505

5

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.

Sjölander K, Karplus K, Brown M, Hughey R, Krogh A, Mian IS, Haussler D. Sjölander K, et al. Comput Appl Biosci. 1996 Aug;12(4):327-45. doi: 10.1093/bioinformatics/12.4.327. Comput Appl Biosci. 1996. PMID: 8902360

6

Simultaneous sequence alignment and tree construction using hidden Markov models.

Edgar RC, Sjölander K. Edgar RC, et al. Among authors: sjolander k. Pac Symp Biocomput. 2003:180-91. Pac Symp Biocomput. 2003. PMID: 12603027 Free article.

7

Automated protein subfamily identification and classification.

Brown DP, Krishnamurthy N, Sjölander K. Brown DP, et al. Among authors: sjolander k. PLoS Comput Biol. 2007 Aug;3(8):e160. doi: 10.1371/journal.pcbi.0030160. PLoS Comput Biol. 2007. PMID: 17708678 Free PMC article.

8

Basic protein sequence analysis.

Krishnamurthy N, Sjölander KV. Krishnamurthy N, et al. Curr Protoc Mol Biol. 2005 May;Chapter 19:Unit 19.5. doi: 10.1002/0471142727.mb1905s70. Curr Protoc Mol Biol. 2005. PMID: 18265355

9

SATCHMO: sequence alignment and tree construction using hidden Markov models.

Edgar RC, Sjölander K. Edgar RC, et al. Among authors: sjolander k. Bioinformatics. 2003 Jul 22;19(11):1404-11. doi: 10.1093/bioinformatics/btg158. Bioinformatics. 2003. PMID: 12874053

10

COACH: profile-profile alignment of protein families using hidden Markov models.

Edgar RC, Sjölander K. Edgar RC, et al. Among authors: sjolander k. Bioinformatics. 2004 May 22;20(8):1309-18. doi: 10.1093/bioinformatics/bth091. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962937

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