Plewniak F - Search Results

1

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. Thompson JD, et al. Among authors: plewniak f. Nucleic Acids Res. 1997 Dec 15;25(24):4876-82. doi: 10.1093/nar/25.24.4876. Nucleic Acids Res. 1997. PMID: 9396791 Free PMC article.

2

PipeAlign: A new toolkit for protein family analysis.

Plewniak F, Bianchetti L, Brelivet Y, Carles A, Chalmel F, Lecompte O, Mochel T, Moulinier L, Muller A, Muller J, Prigent V, Ripp R, Thierry JC, Thompson JD, Wicker N, Poch O. Plewniak F, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3829-32. doi: 10.1093/nar/gkg518. Nucleic Acids Res. 2003. PMID: 12824430 Free PMC article.

3

A comprehensive comparison of multiple sequence alignment programs.

Thompson JD, Plewniak F, Poch O. Thompson JD, et al. Among authors: plewniak f. Nucleic Acids Res. 1999 Jul 1;27(13):2682-90. doi: 10.1093/nar/27.13.2682. Nucleic Acids Res. 1999. PMID: 10373585 Free PMC article.

4

DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches.

Thompson JD, Plewniak F, Thierry J, Poch O. Thompson JD, et al. Among authors: plewniak f. Nucleic Acids Res. 2000 Aug 1;28(15):2919-26. doi: 10.1093/nar/28.15.2919. Nucleic Acids Res. 2000. PMID: 10908355 Free PMC article.

5

vALId: validation of protein sequence quality based on multiple alignment data.

Bianchetti L, Thompson JD, Lecompte O, Plewniak F, Poch O. Bianchetti L, et al. Among authors: plewniak f. J Bioinform Comput Biol. 2005 Aug;3(4):929-47. doi: 10.1142/s0219720005001326. J Bioinform Comput Biol. 2005. PMID: 16078368

6

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Thompson JD, Plewniak F, Poch O. Thompson JD, et al. Among authors: plewniak f. Bioinformatics. 1999 Jan;15(1):87-8. doi: 10.1093/bioinformatics/15.1.87. Bioinformatics. 1999. PMID: 10068696

7

Ballast: blast post-processing based on locally conserved segments.

Plewniak F, Thompson JD, Poch O. Plewniak F, et al. Bioinformatics. 2000 Sep;16(9):750-9. doi: 10.1093/bioinformatics/16.9.750. Bioinformatics. 2000. PMID: 11108697

8

Multiple alignment of complete sequences (MACS) in the post-genomic era.

Lecompte O, Thompson JD, Plewniak F, Thierry J, Poch O. Lecompte O, et al. Among authors: plewniak f. Gene. 2001 May 30;270(1-2):17-30. doi: 10.1016/s0378-1119(01)00461-9. Gene. 2001. PMID: 11403999 Review.

9

Towards a reliable objective function for multiple sequence alignments.

Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O. Thompson JD, et al. Among authors: plewniak f. J Mol Biol. 2001 Dec 7;314(4):937-51. doi: 10.1006/jmbi.2001.5187. J Mol Biol. 2001. PMID: 11734009

10

Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis.

Aniba MR, Siguenza S, Friedrich A, Plewniak F, Poch O, Marchler-Bauer A, Thompson JD. Aniba MR, et al. Among authors: plewniak f. Brief Bioinform. 2009 Jan;10(1):11-23. doi: 10.1093/bib/bbn045. Epub 2008 Oct 29. Brief Bioinform. 2009. PMID: 18971242 Free PMC article.

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