Karplus M - Search Results

1

Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH.

van Vlijmen HW, Curry S, Schaefer M, Karplus M. van Vlijmen HW, et al. Among authors: karplus m. J Mol Biol. 1998 Jan 16;275(2):295-308. doi: 10.1006/jmbi.1997.1418. J Mol Biol. 1998. PMID: 9466910

2

Normal mode calculations of icosahedral viruses with full dihedral flexibility by use of molecular symmetry.

van Vlijmen HW, Karplus M. van Vlijmen HW, et al. Among authors: karplus m. J Mol Biol. 2005 Jul 15;350(3):528-42. doi: 10.1016/j.jmb.2005.03.028. Epub 2005 Apr 7. J Mol Biol. 2005. PMID: 15922356

3

PDB-based protein loop prediction: parameters for selection and methods for optimization.

van Vlijmen HW, Karplus M. van Vlijmen HW, et al. Among authors: karplus m. J Mol Biol. 1997 Apr 11;267(4):975-1001. doi: 10.1006/jmbi.1996.0857. J Mol Biol. 1997. PMID: 9135125

4

Improving the accuracy of protein pKa calculations: conformational averaging versus the average structure.

van Vlijmen HW, Schaefer M, Karplus M. van Vlijmen HW, et al. Among authors: karplus m. Proteins. 1998 Nov 1;33(2):145-58. doi: 10.1002/(sici)1097-0134(19981101)33:2<145::aid-prot1>3.0.co;2-i. Proteins. 1998. PMID: 9779784

5

Hemoglobin Bohr effects: atomic origin of the histidine residue contributions.

Zheng G, Schaefer M, Karplus M. Zheng G, et al. Among authors: karplus m. Biochemistry. 2013 Nov 26;52(47):8539-55. doi: 10.1021/bi401126z. Epub 2013 Nov 13. Biochemistry. 2013. PMID: 24224786

6

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

Schaefer M, Bartels C, Karplus M. Schaefer M, et al. Among authors: karplus m. J Mol Biol. 1998 Dec 4;284(3):835-48. doi: 10.1006/jmbi.1998.2172. J Mol Biol. 1998. PMID: 9826519

7

Electrostatic contributions to molecular free energies in solution.

Schaefer M, van Vlijmen HW, Karplus M. Schaefer M, et al. Among authors: karplus m. Adv Protein Chem. 1998;51:1-57. doi: 10.1016/s0065-3233(08)60650-6. Adv Protein Chem. 1998. PMID: 9615168 Review. No abstract available.

8

Acid and thermal denaturation of barnase investigated by molecular dynamics simulations.

Caflisch A, Karplus M. Caflisch A, et al. Among authors: karplus m. J Mol Biol. 1995 Oct 6;252(5):672-708. doi: 10.1006/jmbi.1995.0528. J Mol Biol. 1995. PMID: 7563082

9

Ligand-induced conformational changes in ras p21: a normal mode and energy minimization analysis.

Ma J, Karplus M. Ma J, et al. Among authors: karplus m. J Mol Biol. 1997 Nov 21;274(1):114-31. doi: 10.1006/jmbi.1997.1313. J Mol Biol. 1997. PMID: 9398520

10

Discrimination of the native from misfolded protein models with an energy function including implicit solvation.

Lazaridis T, Karplus M. Lazaridis T, et al. Among authors: karplus m. J Mol Biol. 1999 May 7;288(3):477-87. doi: 10.1006/jmbi.1999.2685. J Mol Biol. 1999. PMID: 10329155

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