Yokoyama S - Search Results

1

Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination.

Nishinaka T, Shinohara A, Ito Y, Yokoyama S, Shibata T. Nishinaka T, et al. Among authors: yokoyama s. Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11071-6. doi: 10.1073/pnas.95.19.11071. Proc Natl Acad Sci U S A. 1998. PMID: 9736691 Free PMC article.

2

An extended DNA structure through deoxyribose-base stacking induced by RecA protein.

Nishinaka T, Ito Y, Yokoyama S, Shibata T. Nishinaka T, et al. Among authors: yokoyama s. Proc Natl Acad Sci U S A. 1997 Jun 24;94(13):6623-8. doi: 10.1073/pnas.94.13.6623. Proc Natl Acad Sci U S A. 1997. PMID: 9192615 Free PMC article.

3

An interaction between a specified surface of the C-terminal domain of RecA protein and double-stranded DNA for homologous pairing.

Aihara H, Ito Y, Kurumizaka H, Terada T, Yokoyama S, Shibata T. Aihara H, et al. Among authors: yokoyama s. J Mol Biol. 1997 Nov 28;274(2):213-21. doi: 10.1006/jmbi.1997.1403. J Mol Biol. 1997. PMID: 9398528

4

Conformational distortion of sugar moieties in the RecA-bound DNA structure determined by a simulated annealing method.

Nishinaka T, Ito Y, Yokoyama S, Shibata T. Nishinaka T, et al. Among authors: yokoyama s. Nucleic Acids Symp Ser. 1997;(37):269-70. Nucleic Acids Symp Ser. 1997. PMID: 9586103

5

The N-terminal domain of the human Rad51 protein binds DNA: structure and a DNA binding surface as revealed by NMR.

Aihara H, Ito Y, Kurumizaka H, Yokoyama S, Shibata T. Aihara H, et al. Among authors: yokoyama s. J Mol Biol. 1999 Jul 9;290(2):495-504. doi: 10.1006/jmbi.1999.2904. J Mol Biol. 1999. PMID: 10390347

6

Homologous-pairing activity of the human DNA-repair proteins Xrcc3.Rad51C.

Kurumizaka H, Ikawa S, Nakada M, Eda K, Kagawa W, Takata M, Takeda S, Yokoyama S, Shibata T. Kurumizaka H, et al. Among authors: yokoyama s. Proc Natl Acad Sci U S A. 2001 May 8;98(10):5538-43. doi: 10.1073/pnas.091603098. Epub 2001 May 1. Proc Natl Acad Sci U S A. 2001. PMID: 11331762 Free PMC article.

7

Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material.

Shibata T, Nishinaka T, Mikawa T, Aihara H, Kurumizaka H, Yokoyama S, Ito Y. Shibata T, et al. Among authors: yokoyama s. Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8425-32. doi: 10.1073/pnas.111005198. Proc Natl Acad Sci U S A. 2001. PMID: 11459985 Free PMC article. Review.

8

Cell-free production and stable-isotope labeling of milligram quantities of proteins.

Kigawa T, Yabuki T, Yoshida Y, Tsutsui M, Ito Y, Shibata T, Yokoyama S. Kigawa T, et al. Among authors: yokoyama s. FEBS Lett. 1999 Jan 8;442(1):15-9. doi: 10.1016/s0014-5793(98)01620-2. FEBS Lett. 1999. PMID: 9923595 Free article.

9

Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.

Terada T, Ito Y, Shirouzu M, Tateno M, Hashimoto K, Kigawa T, Ebisuzaki T, Takio K, Shibata T, Yokoyama S, Smith BO, Laue ED, Cooper JA. Terada T, et al. Among authors: yokoyama s. J Mol Biol. 1999 Feb 12;286(1):219-32. doi: 10.1006/jmbi.1998.2472. J Mol Biol. 1999. PMID: 9931261

10

Human Rad51 amino acid residues required for Rad52 binding.

Kurumizaka H, Aihara H, Kagawa W, Shibata T, Yokoyama S. Kurumizaka H, et al. Among authors: yokoyama s. J Mol Biol. 1999 Aug 20;291(3):537-48. doi: 10.1006/jmbi.1999.2950. J Mol Biol. 1999. PMID: 10448035

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