Ebisuzaki T - Search Results

1

Nuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins.

Terada T, Ito Y, Shirouzu M, Tateno M, Hashimoto K, Kigawa T, Ebisuzaki T, Takio K, Shibata T, Yokoyama S, Smith BO, Laue ED, Cooper JA. Terada T, et al. Among authors: ebisuzaki t. J Mol Biol. 1999 Feb 12;286(1):219-32. doi: 10.1006/jmbi.1998.2472. J Mol Biol. 1999. PMID: 9931261

2

Cooperative motions of protein and hydration water molecules: molecular dynamics study of scytalone dehydratase.

Okimoto N, Nakamura T, Suenaga A, Futatsugi N, Hirano Y, Yamaguchi I, Ebisuzaki T. Okimoto N, et al. Among authors: ebisuzaki t. J Am Chem Soc. 2004 Oct 13;126(40):13132-9. doi: 10.1021/ja048053u. J Am Chem Soc. 2004. PMID: 15469312

3

Large-scale molecular-dynamics simulation of nanoscale hydrophobic interaction and nanobubble formation.

Koishi T, Yasuoka K, Ebisuzaki T, Yoo S, Zeng XC. Koishi T, et al. Among authors: ebisuzaki t. J Chem Phys. 2005 Nov 22;123(20):204707. doi: 10.1063/1.2102906. J Chem Phys. 2005. PMID: 16351293

4

Molecular dynamics investigation of the double stranded oligonucleotide d(AT)6d(AT)6.

Fujii S, Okimoto N, Ebisuzaki T, Nojima T, Takagi M, Takenaka S. Fujii S, et al. Among authors: ebisuzaki t. Nucleic Acids Res Suppl. 2002;(2):175-6. doi: 10.1093/nass/2.1.175. Nucleic Acids Res Suppl. 2002. PMID: 12903162

5

Microscopic insights into nucleation in a sulfuric acid-water vapor mixture based on molecular dynamics simulation.

Matsubara H, Ebisuzaki T, Yasuoka K. Matsubara H, et al. Among authors: ebisuzaki t. J Chem Phys. 2009 Mar 14;130(10):104705. doi: 10.1063/1.3082079. J Chem Phys. 2009. PMID: 19292547

6

Nanoscale hydrophobic interaction and nanobubble nucleation.

Koishi T, Yoo S, Yasuoka K, Zeng XC, Narumi T, Susukita R, Kawai A, Furusawa H, Suenaga A, Okimoto N, Futatsugi N, Ebisuzaki T. Koishi T, et al. Among authors: ebisuzaki t. Phys Rev Lett. 2004 Oct 29;93(18):185701. doi: 10.1103/PhysRevLett.93.185701. Epub 2004 Oct 25. Phys Rev Lett. 2004. PMID: 15525179

7

Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: applications of virtual image restriction landmark genomic scanning (Vi-RLGS).

Matsuyama T, Kimura MT, Koike K, Abe T, Nakano T, Asami T, Ebisuzaki T, Held WA, Yoshida S, Nagase H. Matsuyama T, et al. Among authors: ebisuzaki t. Nucleic Acids Res. 2003 Aug 1;31(15):4490-6. doi: 10.1093/nar/gkg488. Nucleic Acids Res. 2003. PMID: 12888509 Free PMC article.

8

Calculating response functions in time domain with nonorthonormal basis sets.

Iitaka T, Ebisuzaki T. Iitaka T, et al. Among authors: ebisuzaki t. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Apr;61(4 Pt A):R3314-7. doi: 10.1103/physreve.61.r3314. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000. PMID: 11088188

9

Tyr-317 phosphorylation increases Shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations.

Suenaga A, Kiyatkin AB, Hatakeyama M, Futatsugi N, Okimoto N, Hirano Y, Narumi T, Kawai A, Susukita R, Koishi T, Furusawa H, Yasuoka K, Takada N, Ohno Y, Taiji M, Ebisuzaki T, Hoek JB, Konagaya A, Kholodenko BN. Suenaga A, et al. Among authors: ebisuzaki t. J Biol Chem. 2004 Feb 6;279(6):4657-62. doi: 10.1074/jbc.M310598200. Epub 2003 Nov 12. J Biol Chem. 2004. PMID: 14613932 Free article.

10

Structure and dynamics of RNA polymerase II elongation complex.

Suenaga A, Okimoto N, Futatsugi N, Hirano Y, Narumi T, Ohno Y, Yanai R, Hirokawa T, Ebisuzaki T, Konagaya A, Taiji M. Suenaga A, et al. Among authors: ebisuzaki t. Biochem Biophys Res Commun. 2006 Apr 28;343(1):90-8. doi: 10.1016/j.bbrc.2006.02.124. Epub 2006 Mar 2. Biochem Biophys Res Commun. 2006. PMID: 16529717

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