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Physical and Functional Analysis of Viral RNA Genomes by SHAPE.
Boerneke MA, Ehrhardt JE, Weeks KM. Boerneke MA, et al. Annu Rev Virol. 2019 Sep 29;6(1):93-117. doi: 10.1146/annurev-virology-092917-043315. Epub 2019 Jul 23. Annu Rev Virol. 2019. PMID: 31337286 Free PMC article. Review.
Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid.
Iserman C, Roden CA, Boerneke MA, Sealfon RSG, McLaughlin GA, Jungreis I, Fritch EJ, Hou YJ, Ekena J, Weidmann CA, Theesfeld CL, Kellis M, Troyanskaya OG, Baric RS, Sheahan TP, Weeks KM, Gladfelter AS. Iserman C, et al. Mol Cell. 2020 Dec 17;80(6):1078-1091.e6. doi: 10.1016/j.molcel.2020.11.041. Epub 2020 Nov 27. Mol Cell. 2020. PMID: 33290746 Free PMC article.
Pervasive tertiary structure in the dengue virus RNA genome.
Dethoff EA, Boerneke MA, Gokhale NS, Muhire BM, Martin DP, Sacco MT, McFadden MJ, Weinstein JB, Messer WB, Horner SM, Weeks KM. Dethoff EA, et al. Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11513-11518. doi: 10.1073/pnas.1716689115. Epub 2018 Oct 19. Proc Natl Acad Sci U S A. 2018. PMID: 30341219 Free PMC article.
Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate.
Iserman C, Roden C, Boerneke M, Sealfon R, McLaughlin G, Jungreis I, Park C, Boppana A, Fritch E, Hou YJ, Theesfeld C, Troyanskaya OG, Baric RS, Sheahan TP, Weeks K, Gladfelter AS. Iserman C, et al. bioRxiv [Preprint]. 2020 Jun 12:2020.06.11.147199. doi: 10.1101/2020.06.11.147199. bioRxiv. 2020. PMID: 32587965 Free PMC article. Preprint.