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Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses.
Lubow J, Levoir LM, Ralph DK, Belmont L, Contreras M, Cartwright-Acar CH, Kikawa C, Kannan S, Davidson E, Duran V, Rebellon-Sanchez DE, Sanz AM, Rosso F, Doranz BJ, Einav S, Matsen Iv FA, Goo L. Lubow J, et al. PLoS Pathog. 2023 Oct 9;19(10):e1011722. doi: 10.1371/journal.ppat.1011722. eCollection 2023 Oct. PLoS Pathog. 2023. PMID: 37812640 Free PMC article.
phippery: a software suite for PhIP-Seq data analysis.
Galloway JG, Sung K, Minot SS, Garrett ME, Stoddard CI, Willcox AC, Yaffe ZA, Yucha R, Overbaugh J, Matsen FA. Galloway JG, et al. Bioinformatics. 2023 Oct 3;39(10):btad583. doi: 10.1093/bioinformatics/btad583. Bioinformatics. 2023. PMID: 37740324 Free PMC article.
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin.
Welsh FC, Eguia RT, Lee JM, Haddox HK, Galloway J, Van Vinh Chau N, Loes AN, Huddleston J, Yu TC, Quynh Le M, Nhat NTD, Thi Le Thanh N, Greninger AL, Chu HY, Englund JA, Bedford T, Matsen FA 4th, Boni MF, Bloom JD. Welsh FC, et al. Cell Host Microbe. 2024 Aug 14;32(8):1397-1411.e11. doi: 10.1016/j.chom.2024.06.015. Epub 2024 Jul 19. Cell Host Microbe. 2024. PMID: 39032493 Free article.
Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers.
Stoddard CI, Sung K, Yaffe ZA, Weight H, Beaudoin-Bussières G, Galloway J, Gantt S, Adhiambo J, Begnel ER, Ojee E, Slyker J, Wamalwa D, Kinuthia J, Finzi A, Matsen FA 4th, Lehman DA, Overbaugh J. Stoddard CI, et al. Nat Commun. 2023 Aug 11;14(1):4864. doi: 10.1038/s41467-023-40554-w. Nat Commun. 2023. PMID: 37567924 Free PMC article.
Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers.
Stoddard CI, Sung K, Yaffe ZA, Weight H, Beaudoin-Bussières G, Galloway J, Gantt S, Adhiambo J, Begnel ER, Ojee E, Slyker J, Wamalwa D, Kinuthia J, Finzi A, Matsen FA 4th, Lehman DA, Overbaugh J. Stoddard CI, et al. bioRxiv [Preprint]. 2023 Feb 7:2023.02.06.527330. doi: 10.1101/2023.02.06.527330. bioRxiv. 2023. Update in: Nat Commun. 2023 Aug 11;14(1):4864. doi: 10.1038/s41467-023-40554-w. PMID: 36798400 Free PMC article. Updated. Preprint.
Comparing T cell receptor repertoires using optimal transport.
Olson BJ, Schattgen SA, Thomas PG, Bradley P, Matsen Iv FA. Olson BJ, et al. PLoS Comput Biol. 2022 Dec 7;18(12):e1010681. doi: 10.1371/journal.pcbi.1010681. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36476997 Free PMC article.
33 results