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Page 1
Extrachromosomal DNA amplifications in cancer.
Yi E, Chamorro González R, Henssen AG, Verhaak RGW. Yi E, et al. Nat Rev Genet. 2022 Dec;23(12):760-771. doi: 10.1038/s41576-022-00521-5. Epub 2022 Aug 11. Nat Rev Genet. 2022. PMID: 35953594 Free PMC article. Review.
Glioma progression is shaped by genetic evolution and microenvironment interactions.
Varn FS, Johnson KC, Martinek J, Huse JT, Nasrallah MP, Wesseling P, Cooper LAD, Malta TM, Wade TE, Sabedot TS, Brat D, Gould PV, Wöehrer A, Aldape K, Ismail A, Sivajothi SK, Barthel FP, Kim H, Kocakavuk E, Ahmed N, White K, Datta I, Moon HE, Pollock S, Goldfarb C, Lee GH, Garofano L, Anderson KJ, Nehar-Belaid D, Barnholtz-Sloan JS, Bakas S, Byrne AT, D'Angelo F, Gan HK, Khasraw M, Migliozzi S, Ormond DR, Paek SH, Van Meir EG, Walenkamp AME, Watts C, Weiss T, Weller M, Palucka K, Stead LF, Poisson LM, Noushmehr H, Iavarone A, Verhaak RGW; GLASS Consortium. Varn FS, et al. Cell. 2022 Jun 9;185(12):2184-2199.e16. doi: 10.1016/j.cell.2022.04.038. Epub 2022 May 31. Cell. 2022. PMID: 35649412 Free PMC article.
Single-cell multimodal glioma analyses identify epigenetic regulators of cellular plasticity and environmental stress response.
Johnson KC, Anderson KJ, Courtois ET, Gujar AD, Barthel FP, Varn FS, Luo D, Seignon M, Yi E, Kim H, Estecio MRH, Zhao D, Tang M, Navin NE, Maurya R, Ngan CY, Verburg N, de Witt Hamer PC, Bulsara K, Samuels ML, Das S, Robson P, Verhaak RGW. Johnson KC, et al. Nat Genet. 2021 Oct;53(10):1456-1468. doi: 10.1038/s41588-021-00926-8. Epub 2021 Sep 30. Nat Genet. 2021. PMID: 34594038 Free PMC article.
Mapping extrachromosomal DNA amplifications during cancer progression.
Kim H, Kim S, Wade T, Yeo E, Lipsa A, Golebiewska A, Johnson KC, An S, Ko J, Nam Y, Lee HY, Kang S, Chung H, Niclou SP, Moon HE, Paek SH, Bafna V, Luebeck J, Verhaak RGW. Kim H, et al. Nat Genet. 2024 Nov;56(11):2447-2454. doi: 10.1038/s41588-024-01949-7. Epub 2024 Oct 14. Nat Genet. 2024. PMID: 39402156 Free PMC article.
Spatial concordance of DNA methylation classification in diffuse glioma.
Verburg N, Barthel FP, Anderson KJ, Johnson KC, Koopman T, Yaqub MM, Hoekstra OS, Lammertsma AA, Barkhof F, Pouwels PJW, Reijneveld JC, Rozemuller AJM, Beliën JAM, Boellaard R, Taylor MD, Das S, Costello JF, Vandertop WP, Wesseling P, de Witt Hamer PC, Verhaak RGW. Verburg N, et al. Neuro Oncol. 2021 Dec 1;23(12):2054-2065. doi: 10.1093/neuonc/noab134. Neuro Oncol. 2021. PMID: 34049406 Free PMC article.