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DARS (Decoys As the Reference State) potentials for protein-protein docking.
Biophys J. 2008 Nov 1;95(9):4217-27. doi: 10.1529/biophysj.108.135814. Epub 2008 Aug 1.
Biophys J. 2008.
PMID: 18676649
Free PMC article.
Discrimination of near-native structures in protein-protein docking by testing the stability of local minima.
Kozakov D, Schueler-Furman O, Vajda S.
Kozakov D, et al.
Proteins. 2008 Aug 15;72(3):993-1004. doi: 10.1002/prot.21997.
Proteins. 2008.
PMID: 18300245
Free PMC article.
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Protein docking by the underestimation of free energy funnels in the space of encounter complexes.
Shen Y, Paschalidis ICh, Vakili P, Vajda S.
Shen Y, et al.
PLoS Comput Biol. 2008 Oct;4(10):e1000191. doi: 10.1371/journal.pcbi.1000191. Epub 2008 Oct 10.
PLoS Comput Biol. 2008.
PMID: 18846200
Free PMC article.
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Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.
Ritchie DW, Kozakov D, Vajda S.
Ritchie DW, et al.
Bioinformatics. 2008 Sep 1;24(17):1865-73. doi: 10.1093/bioinformatics/btn334. Epub 2008 Jun 30.
Bioinformatics. 2008.
PMID: 18591193
Free PMC article.
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