R01 GM082209/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2007	1
2008	3
2009	4
2010	1
2012	4
2013	3
2015	1
2016	3
2018	1
2019	1
2024	0

1

CHARMM: the biomolecular simulation program.

Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. Brooks BR, et al. J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. J Comput Chem. 2009. PMID: 19444816 Free PMC article. Review.

2

Rational approaches to improving selectivity in drug design.

Huggins DJ, Sherman W, Tidor B. Huggins DJ, et al. J Med Chem. 2012 Feb 23;55(4):1424-44. doi: 10.1021/jm2010332. Epub 2012 Jan 12. J Med Chem. 2012. PMID: 22239221 Free PMC article. Review. No abstract available.

3

Machine Learning Identifies Chemical Characteristics That Promote Enzyme Catalysis.

Bonk BM, Weis JW, Tidor B. Bonk BM, et al. J Am Chem Soc. 2019 Mar 6;141(9):4108-4118. doi: 10.1021/jacs.8b13879. Epub 2019 Feb 21. J Am Chem Soc. 2019. PMID: 30761897 Free PMC article.

4

Exploiting Temporal Collateral Sensitivity in Tumor Clonal Evolution.

Zhao B, Sedlak JC, Srinivas R, Creixell P, Pritchard JR, Tidor B, Lauffenburger DA, Hemann MT. Zhao B, et al. Cell. 2016 Mar 24;165(1):234-246. doi: 10.1016/j.cell.2016.01.045. Epub 2016 Feb 25. Cell. 2016. PMID: 26924578 Free PMC article.

5

Rational design of thiolase substrate specificity for metabolic engineering applications.

Bonk BM, Tarasova Y, Hicks MA, Tidor B, Prather KLJ. Bonk BM, et al. Biotechnol Bioeng. 2018 Sep;115(9):2167-2182. doi: 10.1002/bit.26737. Epub 2018 Jun 29. Biotechnol Bioeng. 2018. PMID: 29877597 Free PMC article.

6

MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets.

King BM, Tidor B. King BM, et al. Bioinformatics. 2009 May 1;25(9):1165-72. doi: 10.1093/bioinformatics/btp109. Epub 2009 Mar 4. Bioinformatics. 2009. PMID: 19261718 Free PMC article.

7

Charge Optimization Theory for Induced-Fit Ligands.

Shen Y, Gilson MK, Tidor B. Shen Y, et al. J Chem Theory Comput. 2012 Nov 13;8(11):4580-4592. doi: 10.1021/ct200931c. Epub 2012 Jun 17. J Chem Theory Comput. 2012. PMID: 23162383 Free PMC article.

8

Design, synthesis, and biological and structural evaluations of novel HIV-1 protease inhibitors to combat drug resistance.

Parai MK, Huggins DJ, Cao H, Nalam MN, Ali A, Schiffer CA, Tidor B, Rana TM. Parai MK, et al. J Med Chem. 2012 Jul 26;55(14):6328-41. doi: 10.1021/jm300238h. Epub 2012 Jul 13. J Med Chem. 2012. PMID: 22708897 Free PMC article.

9

Molecular mechanisms and design principles for promiscuous inhibitors to avoid drug resistance: lessons learned from HIV-1 protease inhibition.

Shen Y, Radhakrishnan ML, Tidor B. Shen Y, et al. Proteins. 2015 Feb;83(2):351-72. doi: 10.1002/prot.24730. Proteins. 2015. PMID: 25410041 Free PMC article.

10

Strong Enrichment of Aromatic Residues in Binding Sites from a Charge-neutralized Hyperthermostable Sso7d Scaffold Library.

Traxlmayr MW, Kiefer JD, Srinivas RR, Lobner E, Tisdale AW, Mehta NK, Yang NJ, Tidor B, Wittrup KD. Traxlmayr MW, et al. J Biol Chem. 2016 Oct 21;291(43):22496-22508. doi: 10.1074/jbc.M116.741314. Epub 2016 Aug 30. J Biol Chem. 2016. PMID: 27582495 Free PMC article.

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