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ASCOT identifies key regulators of neuronal subtype-specific splicing.
Ling JP, Wilks C, Charles R, Leavey PJ, Ghosh D, Jiang L, Santiago CP, Pang B, Venkataraman A, Clark BS, Nellore A, Langmead B, Blackshaw S. Ling JP, et al. Nat Commun. 2020 Jan 9;11(1):137. doi: 10.1038/s41467-019-14020-5. Nat Commun. 2020. PMID: 31919425 Free PMC article.
Universal prediction of cell-cycle position using transfer learning.
Zheng SC, Stein-O'Brien G, Augustin JJ, Slosberg J, Carosso GA, Winer B, Shin G, Bjornsson HT, Goff LA, Hansen KD. Zheng SC, et al. Genome Biol. 2022 Jan 31;23(1):41. doi: 10.1186/s13059-021-02581-y. Genome Biol. 2022. PMID: 35101061 Free PMC article.
recount3: summaries and queries for large-scale RNA-seq expression and splicing.
Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B. Wilks C, et al. Genome Biol. 2021 Nov 29;22(1):323. doi: 10.1186/s13059-021-02533-6. Genome Biol. 2021. PMID: 34844637 Free PMC article.
23 results