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AOC: Analysis of Orthologous Collections - an application for the characterization of natural selection in protein-coding sequences.
ArXiv [Preprint]. 2024 Jun 13:arXiv:2406.09522v1.
ArXiv. 2024.
PMID: 38947939
Free PMC article.
Preprint.
Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection.
Rincon-Sandoval M, De-Kayne R, Shank SD, Pirro S, Ko'ou A, Abueg L, Tracey A, Mountcastle J, O'Toole B, Balacco J, Formenti G, Jarvis ED, Arcila D, Kosakovsky Pond SL, Davis A, Bloom DD, Betancur-R R.
Rincon-Sandoval M, et al.
Nat Commun. 2024 Nov 20;15(1):10040. doi: 10.1038/s41467-024-54184-3.
Nat Commun. 2024.
PMID: 39567489
Free PMC article.
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AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters.
Weaver S, Dávila Conn VM, Ji D, Verdonk H, Ávila-Ríos S, Leigh Brown AJ, Wertheim JO, Kosakovsky Pond SL.
Weaver S, et al.
Front Bioinform. 2024 Jul 10;4:1400003. doi: 10.3389/fbinf.2024.1400003. eCollection 2024.
Front Bioinform. 2024.
PMID: 39086842
Free PMC article.
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AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS.
Weaver S, Dávila-Conn V, Ji D, Verdonk H, Ávila-Ríos S, Leigh Brown AJ, Wertheim JO, Kosakovsky Pond SL.
Weaver S, et al.
bioRxiv [Preprint]. 2024 Mar 14:2024.03.11.584522. doi: 10.1101/2024.03.11.584522.
bioRxiv. 2024.
Update in:
Front Bioinform. 2024 Jul 10;4:1400003. doi: 10.3389/fbinf.2024.1400003
PMID: 38559140
Free PMC article.
Updated.
Preprint.
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