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HMMER web server: 2018 update.
Potter SC, Luciani A, Eddy SR, Park Y, Lopez R, Finn RD. Potter SC, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W200-W204. doi: 10.1093/nar/gky448. Nucleic Acids Res. 2018. PMID: 29905871 Free PMC article.
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Kalvari I, et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D192-D200. doi: 10.1093/nar/gkaa1047. Nucleic Acids Res. 2021. PMID: 33211869 Free PMC article.
Remote homology search with hidden Potts models.
Wilburn GW, Eddy SR. Wilburn GW, et al. PLoS Comput Biol. 2020 Nov 30;16(11):e1008085. doi: 10.1371/journal.pcbi.1008085. eCollection 2020 Nov. PLoS Comput Biol. 2020. PMID: 33253143 Free PMC article.
Group I introns are widespread in archaea.
Nawrocki EP, Jones TA, Eddy SR. Nawrocki EP, et al. Nucleic Acids Res. 2018 Sep 6;46(15):7970-7976. doi: 10.1093/nar/gky414. Nucleic Acids Res. 2018. PMID: 29788499 Free PMC article.
The Pfam protein families database in 2019.
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, Finn RD. El-Gebali S, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995. Nucleic Acids Res. 2019. PMID: 30357350 Free PMC article.
11 results