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2021 2
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Minian, an open-source miniscope analysis pipeline.
Dong Z, Mau W, Feng Y, Pennington ZT, Chen L, Zaki Y, Rajan K, Shuman T, Aharoni D, Cai DJ. Dong Z, et al. Elife. 2022 Jun 1;11:e70661. doi: 10.7554/eLife.70661. Elife. 2022. PMID: 35642786 Free PMC article.
ezTrack-A Step-by-Step Guide to Behavior Tracking.
Pennington ZT, Diego KS, Francisco TR, LaBanca AR, Lamsifer SI, Liobimova O, Shuman T, Cai DJ. Pennington ZT, et al. Curr Protoc. 2021 Oct;1(10):e255. doi: 10.1002/cpz1.255. Curr Protoc. 2021. PMID: 34610215 Free PMC article.
Offline ensemble co-reactivation links memories across days.
Zaki Y, Pennington ZT, Morales-Rodriguez D, Bacon ME, Ko B, Francisco TR, LaBanca AR, Sompolpong P, Dong Z, Lamsifer S, Chen HT, Carrillo Segura S, Christenson Wick Z, Silva AJ, Rajan K, van der Meer M, Fenton A, Shuman T, Cai DJ. Zaki Y, et al. Nature. 2025 Jan;637(8044):145-155. doi: 10.1038/s41586-024-08168-4. Epub 2024 Nov 6. Nature. 2025. PMID: 39506117 Free PMC article.
Aversive experience drives offline ensemble reactivation to link memories across days.
Zaki Y, Pennington ZT, Morales-Rodriguez D, Francisco TR, LaBanca AR, Dong Z, Lamsifer S, Segura SC, Chen HT, Wick ZC, Silva AJ, van der Meer M, Shuman T, Fenton A, Rajan K, Cai DJ. Zaki Y, et al. bioRxiv [Preprint]. 2023 Aug 19:2023.03.13.532469. doi: 10.1101/2023.03.13.532469. bioRxiv. 2023. Update in: Nature. 2024 Nov 6. doi: 10.1038/s41586-024-08168-4 PMID: 36993254 Free PMC article. Updated. Preprint.
Simultaneous dual-color calcium imaging in freely-behaving mice.
Dong Z, Feng Y, Diego K, Baggetta AM, Sweis BM, Pennington ZT, Lamsifer SI, Zaki Y, Sangiuliano F, Philipsberg PA, Morales-Rodriguez D, Kircher D, Slesinger P, Shuman T, Aharoni D, Cai DJ. Dong Z, et al. bioRxiv [Preprint]. 2024 Jul 5:2024.07.03.601770. doi: 10.1101/2024.07.03.601770. bioRxiv. 2024. PMID: 39005306 Free PMC article. Preprint.
20 results