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Discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors.
BMC Med Genomics. 2011 Apr 14;4:34. doi: 10.1186/1755-8794-4-34.
BMC Med Genomics. 2011.
PMID: 21489305
Free PMC article.
ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads.
Miller CA, Hampton O, Coarfa C, Milosavljevic A.
Miller CA, et al.
PLoS One. 2011 Jan 31;6(1):e16327. doi: 10.1371/journal.pone.0016327.
PLoS One. 2011.
PMID: 21305028
Free PMC article.
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Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines.
Hampton OA, Koriabine M, Miller CA, Coarfa C, Li J, Den Hollander P, Schoenherr C, Carbone L, Nefedov M, Ten Hallers BF, Lee AV, De Jong PJ, Milosavljevic A.
Hampton OA, et al.
Cancer Genet. 2011 Aug;204(8):447-57. doi: 10.1016/j.cancergen.2011.07.009.
Cancer Genet. 2011.
PMID: 21962895
Free PMC article.
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