R33 GM070065/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2004	1
2005	3
2006	3
2007	2
2008	1
2024	0

1

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahrén D, Tsoka S, Darzentas N, Kunin V, López-Bigas N. Karp PD, et al. Nucleic Acids Res. 2005 Oct 24;33(19):6083-9. doi: 10.1093/nar/gki892. Print 2005. Nucleic Acids Res. 2005. PMID: 16246909 Free PMC article.

2

The Pathway Tools cellular overview diagram and Omics Viewer.

Paley SM, Karp PD. Paley SM, et al. Nucleic Acids Res. 2006 Aug 7;34(13):3771-8. doi: 10.1093/nar/gkl334. Print 2006. Nucleic Acids Res. 2006. PMID: 16893960 Free PMC article.

3

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD. Caspi R, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D623-31. doi: 10.1093/nar/gkm900. Epub 2007 Oct 27. Nucleic Acids Res. 2008. PMID: 17965431 Free PMC article.

4

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD. Caspi R, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D511-6. doi: 10.1093/nar/gkj128. Nucleic Acids Res. 2006. PMID: 16381923 Free PMC article.

5

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers.

Green ML, Karp PD. Green ML, et al. Nucleic Acids Res. 2005 Jul 20;33(13):4035-9. doi: 10.1093/nar/gki711. Print 2005. Nucleic Acids Res. 2005. PMID: 16034025 Free PMC article.

6

The outcomes of pathway database computations depend on pathway ontology.

Green ML, Karp PD. Green ML, et al. Nucleic Acids Res. 2006 Aug 7;34(13):3687-97. doi: 10.1093/nar/gkl438. Print 2006. Nucleic Acids Res. 2006. PMID: 16893953 Free PMC article.

7

Querying and computing with BioCyc databases.

Krummenacker M, Paley S, Mueller L, Yan T, Karp PD. Krummenacker M, et al. Bioinformatics. 2005 Aug 15;21(16):3454-5. doi: 10.1093/bioinformatics/bti546. Epub 2005 Jun 16. Bioinformatics. 2005. PMID: 15961440 Free PMC article.

8

Using the MetaCyc pathway database and the BioCyc database collection.

Caspi R, Karp PD. Caspi R, et al. Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:1.17.1-1.17.51. doi: 10.1002/0471250953.bi0117s20. Curr Protoc Bioinformatics. 2007. PMID: 18428679

9

Call for an enzyme genomics initiative.

Karp PD. Karp PD. Genome Biol. 2004;5(8):401. doi: 10.1186/gb-2004-5-8-401. Epub 2004 Jul 30. Genome Biol. 2004. PMID: 15287973 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Results by year

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

9 results

Results by year

Search Page

Filters

My Custom Filters

Results by year

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

9 results

Results by year