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Protein assembly and crowding simulations.
Heo L, Sugita Y, Feig M. Heo L, et al. Curr Opin Struct Biol. 2022 Apr;73:102340. doi: 10.1016/j.sbi.2022.102340. Epub 2022 Feb 23. Curr Opin Struct Biol. 2022. PMID: 35219215 Free PMC article. Review.
Modeling Crowded Environment in Molecular Simulations.
Ostrowska N, Feig M, Trylska J. Ostrowska N, et al. Front Mol Biosci. 2019 Sep 11;6:86. doi: 10.3389/fmolb.2019.00086. eCollection 2019. Front Mol Biosci. 2019. PMID: 31572730 Free PMC article. Review.
Whole-Cell Models and Simulations in Molecular Detail.
Feig M, Sugita Y. Feig M, et al. Annu Rev Cell Dev Biol. 2019 Oct 6;35:191-211. doi: 10.1146/annurev-cellbio-100617-062542. Epub 2019 Jul 12. Annu Rev Cell Dev Biol. 2019. PMID: 31299173 Free PMC article. Review.
Thermal Stability of Peptide Nucleic Acid Complexes.
Jasiński M, Miszkiewicz J, Feig M, Trylska J. Jasiński M, et al. J Phys Chem B. 2019 Oct 3;123(39):8168-8177. doi: 10.1021/acs.jpcb.9b05168. Epub 2019 Sep 20. J Phys Chem B. 2019. PMID: 31491077 Free PMC article.
CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed.
Hwang W, Austin SL, Blondel A, Boittier ED, Boresch S, Buck M, Buckner J, Caflisch A, Chang HT, Cheng X, Choi YK, Chu JW, Crowley MF, Cui Q, Damjanovic A, Deng Y, Devereux M, Ding X, Feig MF, Gao J, Glowacki DR, Gonzales JE 2nd, Hamaneh MB, Harder ED, Hayes RL, Huang J, Huang Y, Hudson PS, Im W, Islam SM, Jiang W, Jones MR, Käser S, Kearns FL, Kern NR, Klauda JB, Lazaridis T, Lee J, Lemkul JA, Liu X, Luo Y, MacKerell AD Jr, Major DT, Meuwly M, Nam K, Nilsson L, Ovchinnikov V, Paci E, Park S, Pastor RW, Pittman AR, Post CB, Prasad S, Pu J, Qi Y, Rathinavelan T, Roe DR, Roux B, Rowley CN, Shen J, Simmonett AC, Sodt AJ, Töpfer K, Upadhyay M, van der Vaart A, Vazquez-Salazar LI, Venable RM, Warrensford LC, Woodcock HL, Wu Y, Brooks CL 3rd, Brooks BR, Karplus M. Hwang W, et al. J Phys Chem B. 2024 Oct 17;128(41):9976-10042. doi: 10.1021/acs.jpcb.4c04100. Epub 2024 Sep 20. J Phys Chem B. 2024. PMID: 39303207 Free PMC article. Review.
Modeling SARS-CoV-2 proteins in the CASP-commons experiment.
Kryshtafovych A, Moult J, Billings WM, Della Corte D, Fidelis K, Kwon S, Olechnovič K, Seok C, Venclovas Č, Won J; CASP-COVID participants. Kryshtafovych A, et al. Proteins. 2021 Dec;89(12):1987-1996. doi: 10.1002/prot.26231. Epub 2021 Oct 5. Proteins. 2021. PMID: 34462960 Free PMC article.
41 results