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Database contains
251540 sequences
from 368 species

IMGT/LIGM-DB sequence

Version:
1.2.11
Database release:
LIGMDB_V12
Citing IMGT/LIGM-DB:
Giudicelli, V., Duroux P., Ginestoux C., Folch G., Jabado-Michaloud J., Chaume D., Lefranc M.-P., Nucleic Acids Res., 34:D781-D784 (2006). PMID:16381979 Abstract Full PDF

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OU596105 - Annotation

Sections
Accession number OU596105
Sequence version 1
Secondary accession numbers
IMGT annotation level by annotators
Definition Homo sapiens mRNA for mRNA (IGHV3-30 gene), clone IGHV3-30*19_T189C
Species Homo sapiens (human)
Taxonomy cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens
Sequence length 296
IMGT/LIGM-DB dates 24-NOV-2021
  30-NOV-2021 (v. 4)

OBTENTION

Specificities
Disease related

IDENTIFICATION

Molecule type cDNA
Configuration type rearranged
Gene type variable
Molecule entity type L-V-D-J-C-sequence
Functionality type productive
Chain type IG-Heavy
Structure type regular
Location type
Other keywords antigen receptor, Immunoglobulin superfamily (IgSF), immunoglobulin (IG), IMGT reference sequence, IMGT-NC inferred allele

CLASSIFICATION

IMGT Groups IGHV
IMGT Subgroups IGHV3

DESCRIPTION

L-V-D-J-C-SEQUENCE   <1..>296
  clone IGHV3-30*19_T189C
  db_xref taxon:9606
  IMGT_allele IGHV3-30*20
  IMGT_gene IGHV3-30
  inference alignment:ERR6590631
  mol_type mRNA
  organism Homo sapiens
  productive
  protein_id CAG9304373.1
V-REGION   1..296
  CDR_length [8.8.2]
  FR_length [25.17.38.G]
  IMGT_allele IGHV3-30*20
  IMGT_gene IGHV3-30
  IMGT_note Inferred functionality:(F)
caggtgcagctggtggagtctgggggaggcgtggtccagcctgggaggtccctgagactctcctgtgcagcgtctggattcaccttcagtagctatggcatgcactgggtccgccaggctccaggcaaggggctggagtgggtggcagttatatcatatgatggaagcaataaatactacgcagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagctgaggacacggctgtgtattactgtgcgagaga Q V Q L V E S G G G V V Q P G R S L R L S C A A S G F T F S S Y G M H W V R Q A P G K G L E W V A V I S Y D G S N K Y Y A D S V K G R F T I S R D N S K N T L Y L Q M N S L R A E D T A V Y Y C A R
R C S W W S L G E A W S S L G G P * D S P V Q R L D S P S V A M A C T G S A R L Q A R G W S G W Q L Y H M M E A I N T T Q T P * R A D S P S P E T I P R T R C I C K * T A * E L R T R L C I T V R E
G A A G G V W G R R G P A W E V P E T L L C S V W I H L Q * L W H A L G P P G S R Q G A G V G G S Y I I * W K Q * I L R R L R E G P I H H L Q R Q F Q E H A V S A N E Q P E S * G H G C V L L C E R
FR1-IMGT   1..75
  AA_IMGT AA 1 to 26, AA 10 is missing
caggtgcagctggtggagtctgggggaggcgtggtccagcctgggaggtccctgagactctcctgtgcagcgtct Q V Q L V E S G G G V V Q P G R S L R L S C A A S
R C S W W S L G E A W S S L G G P * D S P V Q R
G A A G G V W G R R G P A W E V P E T L L C S V
1st-CYS   64..66
CDR1-IMGT   76..99
  AA_IMGT AA 27 to 38, AA 31, 32, 33 and 34 are missing
ggattcaccttcagtagctatggc G F T F S S Y G
D S P S V A M
I H L Q * L W
FR2-IMGT   100..150
  AA_IMGT AA 39 to 55
atgcactgggtccgccaggctccaggcaaggggctggagtgggtggcagtt M H W V R Q A P G K G L E W V A V
C T G S A R L Q A R G W S G W Q
A L G P P G S R Q G A G V G G S
CONSERVED-TRP   106..108
CDR2-IMGT   151..174
  AA_IMGT AA 56 to 65, AA 60 and 61 are missing
atatcatatgatggaagcaataaa I S Y D G S N K
Y H M M E A I
I I * W K Q *
FR3-IMGT   175..288
  AA_IMGT AA 66 to 104, AA 73 is missing
tactacgcagactccgtgaagggccgattcaccatctccagagacaattccaagaacacgctgtatctgcaaatgaacagcctgagagctgaggacacggctgtgtattactgt Y Y A D S V K G R F T I S R D N S K N T L Y L Q M N S L R A E D T A V Y Y C
T T Q T P * R A D S P S P E T I P R T R C I C K * T A * E L R T R L C I T
L R R L R E G P I H H L Q R Q F Q E H A V S A N E Q P E S * G H G C V L L
3'V-REGION   286..296
tgtgcgagaga C A R
V R E
C E R
2nd-CYS   286..288
CDR3-IMGT   289..296
  AA_IMGT AA 105 to 106
gcgagaga A R
R E
E R

Literature references

[1] -1--1
Peres A.

Submitted to the ENA/GenBank/DDBJ databases (31-AUG-2021)
BAR-ILAN UNIVERSITY, Yaari lab, Bar Ilan University, Ramat Gan 5290002, Israel

Database cross-references

Database Identifiers Relation
MD5 71b9c375ba619d8534cb80b1aa2a3e54

Sequence

Length : 296 BP
Composition : 70 A; 70 C; 94 G; 62 T; 0 other

     caggtgcagc tggtggagtc tgggggaggc gtggtccagc ctgggaggtc cctgagactc        60
     tcctgtgcag cgtctggatt caccttcagt agctatggca tgcactgggt ccgccaggct       120
     ccaggcaagg ggctggagtg ggtggcagtt atatcatatg atggaagcaa taaatactac       180
     gcagactccg tgaagggccg attcaccatc tccagagaca attccaagaa cacgctgtat       240
     ctgcaaatga acagcctgag agctgaggac acggctgtgt attactgtgc gagaga           296