Binary Alignment Map: Difference between revisions
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* [https://samtools.github.io/hts-specs/SAMv1.pdf SAM format specification] |
* [https://samtools.github.io/hts-specs/SAMv1.pdf SAM format specification] |
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* [http://www.genozip.com Genozip] Compressor for BAM/SAM/CRAM and other genomic formats |
* [http://www.genozip.com Genozip] Compressor for BAM/SAM/CRAM and other genomic formats |
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* [http://purl.bioontology.org/ontology/EDAM?conceptid=http%3A%2F%2Fedamontology.org%2Fformat_2572 EDAM ontology term] |
* [http://purl.bioontology.org/ontology/EDAM?conceptid=http%3A%2F%2Fedamontology.org%2Fformat_2572 EDAM ontology term]{{Dead link|date=May 2021 |bot=InternetArchiveBot |fix-attempted=yes }} |
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Revision as of 06:12, 31 May 2021
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing;[1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files.[2][3]
BAM is the compressed binary representation of SAM (Sequence Alignment Map). BAM is in compressed BGZF format.
See also
Compression
BAM, SAM and CRAM files may be further compressed using Genozip[4]
External links
- SAM format specification
- Genozip Compressor for BAM/SAM/CRAM and other genomic formats
- EDAM ontology term[permanent dead link]
References
- ^ "Carl Zimmer's Game of Genomes, Season 1: Episode 3, BAM Reveals All". STAT. Retrieved 2016-08-21.
- ^ Li, Heng (2009-06-08). "The Sequence Alignment/Map format and SAMtools" (PDF). Bioinformatics. 25: 2078–9. doi:10.1093/bioinformatics/btp352. PMC 2723002. PMID 19505943.
- ^ "Binary Alignment Map". National Cancer Institute Wiki. Retrieved 2016-08-21.
- ^ Lan, D., et al. 2021, Genozip: a universal extensible genomic data compressor, Bioinformatics